Gene Information

Name : YPTS_4274 (YPTS_4274)
Accession : YP_001874674.1
Strain :
Genome accession: NC_010635
Putative virulence/resistance : Virulence
Product : secretion system effector C (SseC) family protein
Function : -
COG functional category : S : Function unknown
COG ID : COG5613
EC number : -
Position : 53167 - 54372 bp
Length : 1206 bp
Strand : -
Note : PFAM: secretion system effector C (SseC) family protein; KEGG: yps:pYV0055 YopB; putative Yop targeting protein

DNA sequence : 
ATGAGTGCGTTGATAACCCATGACCGCTCAACGCCAGTAACTGGAAGTCTACTTCCCTACGTCGAGACACCAGCGCCCGC
CCCCCTTCAGACCCAACAAGTCGCGGGAGAACTGAAGGATAAAAATGGCGGGGTGAGTTCTCAGGGCGTACAGCTCCCTG
CACCACTAGCAGTGGTTGCCAGCCAAGTTACTGAAGGACAACAGCAAGAAGTCACTAAATTATTGGAGTCGGTCACCCGC
GGCGCGGCAGGATCTCAACTGATATCAAATTATGTTTCAGTGCTAACGAAGTTTACGCTTGCTTCACCTGATACATTTGA
GATTGAGTTAGGTAAGCTAGTTTCTAATTTAGAAGAAGTACGCAAAGACATAAAAATCGCTGATATTCAGCGTCTTCATG
AACAAAACATGAAGAAAATTGAAGAGAATCAAGAGAAAATCAAAGAAACAGAAGAGAATGCCAAGCAAGTCAAGAAATCC
GGCATTGCATCAAAGATTTTTGGCTGGCTCAGCGCCATAGCCTCAGTGATTGTCGGTGCCATCATGGTGGCCTCAGGGGT
AGGAGCCGTTGCCGGTGCAATGATGGTTGCCTCAGGCGTAATTGGGATGGCGAATATGGCAGTGAAACAAGCGGCGGAAG
ATGGCCTGATATCCCAAGAGGCAATGAAAATATTAGGGCCGATACTCACTGCGATTGAAGTCGCATTGACTGTAGTTTCA
ACCGTAATGACCTTTGGCGGTTCGGCACTAAAATGCCTGGCTAATATTGGCGCAAAACTCGGTGCTAACACCGCAAGTCT
TGCGGCTAAAGGAGCCGAGTTTTCGGCCAAAGTTGCCCAAATTTCGACAGGCATATCAAACACTGTCGGGAGTGCAGTGA
CTAAATTAGGGGGCAGTTTTGCTGGTTTAACAATGAGCCATGCAATCCGTACAGGATCACAGGCAACACAAGTCGCCGTT
GGTGTGGGCAGCGGAATAACTCAGACCATCAATAATAAAAAGCAAGCTGATTTACAACATAATAACGCTGATTTGGCCTT
GAACAAGGCAGACATGGCAGCGTTACAAAGTATTATTGACCGACTCAAAGAAGAATTATCCCATTTGTCAGAGTCACATC
AACAAGTGATGGAACTGATTTTCCAGATGATTAATGCAAAAGGTGACATGCTGCATAATTTGGCCGGCAGACCCCATACT
GTTTAA

Protein sequence : 
MSALITHDRSTPVTGSLLPYVETPAPAPLQTQQVAGELKDKNGGVSSQGVQLPAPLAVVASQVTEGQQQEVTKLLESVTR
GAAGSQLISNYVSVLTKFTLASPDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNMKKIEENQEKIKETEENAKQVKKS
GIASKIFGWLSAIASVIVGAIMVASGVGAVAGAMMVASGVIGMANMAVKQAAEDGLISQEAMKILGPILTAIEVALTVVS
TVMTFGGSALKCLANIGAKLGANTASLAAKGAEFSAKVAQISTGISNTVGSAVTKLGGSFAGLTMSHAIRTGSQATQVAV
GVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLHNLAGRPHT
V

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lopB AAO18055.1 LopB Virulence TTSS locus Protein 5e-41 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_4274 YP_001874674.1 secretion system effector C (SseC) family protein VFG0379 Protein 7e-158 99
YPTS_4274 YP_001874674.1 secretion system effector C (SseC) family protein VFG0203 Protein 2e-44 42