Gene Information

Name : YPTS_4211 (YPTS_4211)
Accession : YP_001874611.1
Strain :
Genome accession: NC_010635
Putative virulence/resistance : Virulence
Product : type III secretion system needle protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4148 - 4411 bp
Length : 264 bp
Strand : +
Note : TIGRFAM: type III secretion system needle protein; KEGG: ypa:YPA_CD0010 type III secretion protein

DNA sequence : 
ATGAGTAACTTCTCTGGATTTACGAAAGGAACCGATATCGCAGACTTAGATGCGGTGGCTCAAACGCTCAAGAAGCCAGC
AGACGATGCAAACAAAGCGGTTAATGACTCGATAGCAGCATTGAAAGATAAGCCTGACAACCCGGCGCTACTTGCTGACT
TACAACATTCAATTAATAAATGGTCGGTAATTTACAATATAAACTCAACCATAGTTCGTAGCATGAAAGACTTAATGCAA
GGCATCCTACAGAAGTTCCCATAA

Protein sequence : 
MSNFSGFTKGTDIADLDAVAQTLKKPADDANKAVNDSIAALKDKPDNPALLADLQHSINKWSVIYNINSTIVRSMKDLMQ
GILQKFP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscF AAO18031.1 LscF Virulence TTSS locus Protein 1e-23 75

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_4211 YP_001874611.1 type III secretion system needle protein VFG0405 Protein 5e-35 100
YPTS_4211 YP_001874611.1 type III secretion system needle protein VFG0214 Protein 2e-19 69