Gene Information

Name : YPTS_4209 (YPTS_4209)
Accession : YP_001874609.1
Strain :
Genome accession: NC_010635
Putative virulence/resistance : Virulence
Product : YscD/HrpQ family type III secretion apparatus protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2691 - 3950 bp
Length : 1260 bp
Strand : +
Note : TIGRFAM: type III secretion apparatus protein, YscD/HrpQ family; PFAM: Forkhead-associated protein; KEGG: ypa:YPA_CD0011 type III secretion protein

DNA sequence : 
GTGAGTTGGGTCTGTCGTTTTTATCAAGGGAAGCACCGTGGTGTTGAAGTTGAGCTTCCTCATGGGCGCTGTGTTTTTGG
TTCAGACCCGTTGCAGTCAGATATTGTTCTTTCTGACAGCGAAATAGCACCCGTGCATTTAGTGCTGATGGTCGATGAAG
AAGGTATTCGCCTAACTGATTCTGCAGAACCTCTACTACAAGAAGGGCTTCCCGTGCCGTTGGGGACTCTTCTTCGCGCG
GGCTCTTGTCTGGAAGTAGGTTTTTTACTGTGGACATTTGTCGCCGTAGGGCAACCTTTGCCAGAGACGTTACAGGTTCC
CACGCAGAGAAAAGAGCCAACCGACAGGTTACCTCGTTCACGACTTGGGATTGGGCTTGGAGTTCTTTCTTTATTGTTGC
TTTTGACTTTTTTGGGGCTGCTAGGGCACGGATTGTGGCGCGAGTATAACCAGGATGGACAACTTGTTGAGCAAGAAGTA
CGGCGCTTGCTGGCAACTGCTGCTTACAAGGATGTCGTTTTAACATCGCCCAAAAAAGAGGGTGAACCTTGGTTATTAAC
TGGTTATATCCAGGATAATCATGCCCGCTTGTCACTGCAAAATTTTCTTGAGAGCCATGGCATTCCATTCCGGCTTGAAC
TGCGCAGCATGGAAGAACTGCGTCAGGGGGCAGAATTCATCCTGCAACGGTTGGGATACCATGGAATTGAGGTTTCTTTA
GCACCGCAAGCGGGATGGCTACAATTGAATGGGGAAGTGTCAGAGGAAATACAAAAGCAAAAAATTGATAGCCTGCTGCA
AGCTGAAGTGCCAGGGCTGCTCGGTGTAGAAAGTAAAGTGCGGATTGCCGGTAATCAACGCAAGCGGCTTGATGCATTAC
TTGAACAATTTGGTCTGGATTCAGATTTCACTGTAAATGTTAAAGGTGAGCTGATTGAATTACGCGGGCAAGTCAATGAT
GAAAAATTGAATTCATTTAATCAACTACAACAAACTTTTCGCCAAGAGTTTGGCAATCGACCTAAATTAGAACTGGTCAA
TGTCGGGGGGCAACCCCAGCATGATGAATTGAATTTCGAGGTGCAAGCTATCTCGTTAGGGAAAGTGCCCTATGTGGTAC
TCGACAATCATCAACGCTATCCAGAAGGTGCCATACTTAACAATGGCGTTCGTATTCTGGCTATTCGACGCGATGCGGTG
ATTGTGAGTAAAGGAAAACGGGAATTTGTGATCCAACTCAATGGAGGTAAACCTCGATGA

Protein sequence : 
MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRA
GSCLEVGFLLWTFVAVGQPLPETLQVPTQRKEPTDRLPRSRLGIGLGVLSLLLLLTFLGLLGHGLWREYNQDGQLVEQEV
RRLLATAAYKDVVLTSPKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGIEVSL
APQAGWLQLNGEVSEEIQKQKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLEQFGLDSDFTVNVKGELIELRGQVND
EKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHDELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAV
IVSKGKREFVIQLNGGKPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscD AAO18032.1 LscD Virulence TTSS locus Protein 4e-82 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_4209 YP_001874609.1 YscD/HrpQ family type III secretion apparatus protein VFG0403 Protein 0.0 100
YPTS_4209 YP_001874609.1 YscD/HrpQ family type III secretion apparatus protein VFG0212 Protein 4e-75 43