Gene Information

Name : YPTS_3822 (YPTS_3822)
Accession : YP_001874232.1
Strain : Yersinia pseudotuberculosis PB1/+
Genome accession: NC_010634
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 4264658 - 4265155 bp
Length : 498 bp
Strand : -
Note : TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: yps:YPTB3638 hypothetical protein

DNA sequence : 
ATGAGTAAAAATAAGCAAAGCAGTGTTGCCCCAAAAGAAAGGATTAACATCAAGTATGTGCCGAATACTGGCGACCAGGT
TGCAGAAATTGAATTACCGCTGAATCTGCTGGTTGTGGGTGATCTTAAAGGCGTGCGTGAAGATACATCAATTGAAGAGC
GTCAGGTTGTTTCGGTCAATAAGAATAACTTCAACTCAGTCATGAACGAAGCAAATATCAGTCTGAGTTTCAATGTGCCT
AATCGCCTTGAAGGTGATGGGGAAGAAGACATGCCGGTCGCCTTGTCGATCAAGGGTCTCGATGATTTCTCGCCTGACAA
TGTGGCGAAAAAAGTTCCAGAGCTCAAAAAAATTCTGGAACTACGGGAAGCGCTAGTGGCATTGAAAGGGCCATTGGGGA
ATATCCCGGCTTTCCGCTCTCGTCTACAGGATTTGCTTGGCAATGAAGATATGCGCGAGCAGTTGCTGAAAGAATTGGAC
ATTCTTAATCAAAAATAA

Protein sequence : 
MSKNKQSSVAPKERINIKYVPNTGDQVAEIELPLNLLVVGDLKGVREDTSIEERQVVSVNKNNFNSVMNEANISLSFNVP
NRLEGDGEEDMPVALSIKGLDDFSPDNVAKKVPELKKILELREALVALKGPLGNIPAFRSRLQDLLGNEDMREQLLKELD
ILNQK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec17 YP_851427.1 hypothetical protein Not tested PAI II APEC-O1 Protein 6e-37 55
aec17 AAQ96711.1 Aec17 Not tested AGI-1 Protein 4e-37 55
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 2e-26 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_3822 YP_001874232.1 type VI secretion protein VFG2092 Protein 1e-40 62
YPTS_3822 YP_001874232.1 type VI secretion protein VFG2474 Protein 2e-28 47