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Name : YPTS_3809 (YPTS_3809) Accession : YP_001874219.1 Strain : Yersinia pseudotuberculosis PB1/+ Genome accession: NC_010634 Putative virulence/resistance : Unknown Product : type VI secretion protein IcmF Function : - COG functional category : S : Function unknown COG ID : COG3523 EC number : - Position : 4246637 - 4250170 bp Length : 3534 bp Strand : - Note : TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: yps:YPTB3625 hypothetical protein DNA sequence : ATGAAATTGCCGTTCTTTATACGCATAGCCAAGCCCGCCATTCCTCGCCTTAAAGCGTCAATACCGGTGGTATTGGCGTT GATGGCTTGTGCGGCACTCATTTGGGTATGGATTTACGGACCCGAGTGGCAATTGGGGGAAAATTACCCGTTTGAGACAT TATTGAGCCGTTGGTTGGTCACGGCGGTATTTGTCTTGGTGGCCGTTTGTTGGCTCAGCCTGAAAGTCATGAGGCGAGTA CAACACCTGGAAAAACTCCAACTGCAAACGAAAATTCAGCTCGATGACCCCGTCAGTGCTGATATCGAACAACAAAACCA CTACCTCAATGGCTGGAAGCACCAACTTCAGCGCCATTTGAACACCCCAGAATATCTGTATCGCCTGCCCTGGTACATGG TCATTGGTGCGCGCAATAGCGGCAAAAGTACACTGATCAAAGAAGGGTATAAACTGACAGAGATCTCCGCATCCGAGCGG CTCCATGTGGAAGGCGCAGCAGATCTGCGCGTCCGCTGCTGGTTGGGGGAACAAGCGGTTATTATCGATCCTGCGGGGGT GCTGATTGAACAACCTACGACACCGATCGCGGGCAAAGCATCACTCAACAGCCGCTTATGGCAAAGTCTATTATCCTGGC TGATTGAACAGCGCCAGCGTCAGCCGCTAAACGGCATTATTCTCACCGTCGATCTTCATCAGATGATGACCGCGAATAAA GCGCAGCGGGAGACGTACGTCGCTGATATTCATCAACGGCTGCAAGAGATACGGCTGTCTTTGCACAGCCAGGTGCCGCT GTATGTGGTGTTCACCAAAATGGACCTGCTGTACGGCTTCGAGGCCATGTACCAATCGCTGGATAAAGCCGAACGTGAAG CGGTTCTGGGGGTGACGTTCAGCCTCAATGCGGCGGATCCGGACGTGTGGCGGACGGAGTTGAAACAGTTCTGGCAGCAA TGGGTCGCACAACTGAATGGCGCGATGCCGGACATGATGCTGAACAGTGTGGATGCCGGGCAGCGTAGCCAGTTGTTTAG CTTCACTCGCCAGATGCAGGGCCTGCACGATTACGTCGTGCAACTGCTGGAAGGCATTCTGTACCGTGGAGAACATGCCC AGCCGCTGTTACGGGGGGTTTATCTCACGTCTGCCCAGCAACGTGGGCAAATGGACGATATCTTTACTCAATCTGCCGCG GTGCAATATCACCTTGCACCACAGGCCTTCCCGACCTGGCCGGTCTCGGATACGACGCCGTATTTTACCAAAGCGCTGTT TAACCAGGTGCTGTTGGCCGAACCCAATCTGGCCGGAGAGAACGGTATCTGGCTACAAAAAACGAGAAAGCGAATGTTCA TTTTCTCGGGGGTGGGTGCCCTGGCCGCGCTGACCTTATGGGGCTACTGGCACTACTATCACCAGCTTAACTACCGGGCT GGCGAAGAGGTATTAACCCAGGCAAAAACCTTCTTATCGATCCCACCGCCAGAAGGCGATGACCGTTATGGCAATCTGCA ACTGCCGCTGCTAAACCCCATCCGTGACGCCACGCTGGCTTACGGTAATTACCATGAACGCAGCCCGTTCCTGGCGGATA TGGGGTTATATCAGGGCAATAATATCGGGCCTTATGTCGAAAGCACTTACTTGCAACTCCTACAGCAACGTTTTGTCCCG GCACTGATGAGCGGGCTGTTGGAACAACTGAACGCCGCACCGAAGGGCAGTGAAGAGAAACTGGAAATTCTGCGGGTGAT GCGGATGTTGGAAGACGGCAGTGGCCGCAATGCCGCGCTGGTTGAACAATATATGAGCCACCGCTGGAGCCAACAATTCA ACGGCCAGCGCGAGTTGCAGGAGCAACTGTCGAGCCACCTGAACTACGCACTGAAACACACCGACTGGCACGGCGCACGG GAAAGTGGCGATCAATATGCGATCAAGAGCTTTGTCCCGTACCTCCGCCCGATCCAGTCAGCGCAGCAAGAGTTGAGTAA ACTCTCGATCTACCAACGGGTGTATCAGAACCTGCGGATCAAAGCACAGGATGCGTTGCCGCCCGCGCTCGATTTGCGCG ATCAGATCGGCGCAAGTTTTGACGACATTTTTGTCTCCGGTAACGATCGCCTGCTGGTGATCCCGCAATTCCTGACCCGT AGCGGCTTACAGAGTTACTTCATCAAACAGAACGATCAACTGGTTGATCTCACGGTGATGGACAGTTGGGTACTTAATCT CACCAAGAACGTCGAATACAGCGAGGCAGACCGCAAAGAGATCCATCGCCAGGTGACCGAACAGTATCTTGGCGACTATA CCGCCACCTGGCGTGCGGCCATGAATAACCTATCGGTCAGTGATTTTGAAGGCTTGCCACAGGCGATCAGCGCCATTGAA CAGGTGATCAGCGGGGAACAACCTTTCCGCCGTGCACTGCAAACGCTGAGTGACAACACCCGCTTGCCGGTTATCTCGGA TCTGATCCCCGCGAAGGAGCAGCAAGAGCTGCTGCAAAAACCCGATTACCTGCTGCTGACCCGCATCAACCGTGAGTTCT CCCCCGAAACGGCGGTGCTGGTGGAGAATGGCGATAAAGGCAGCGTGATCCAAAGTGTTTACCAAAAACTGACCGAGCTA CACCGCTATCTGTTGGCGATCCAAAACTCGCCCGCGCCGGGCAAAGCGGCGTTGAAGGCGGTGCAATTACGTCTGGATCA AAACAACAGTGATCCGATTTTCGAAGTCCAGCAACTGGCTAAAAACCTGCCGGAGCCGCTAAACCGCTGGGTGGGCGAAC TGGCAGAGCAAGCCTGGCGGGTGGTGATGATGGAGGCGATCCAGTCACTGGAAGTGGAGTGGAATGAGACGGTGATCAAA CAGTATCAAACCTACCTGGCCGGACGTTATCCCTTCGATCCTCACGCGAAACAGGATGTACCACTCAGTGAGTTTGAACG CTTCTTCGGGCCGAAAGGCACGCTCGATGCATTCTATCAGCAGAACCTGAAACCGTTTGTCGAAAACAACCTGACCGGTG GCAGCGATGGCGAATTGCTGATCCGGCCTGATGTGTTACAGCAACTGGCGCAGGCGCGGAAAATTCGCGACACCTTCTTC TCGGCCCAAAACGGCCTGGGCACACAGTTTGCGATTGAACCGGTGCTGTTAAGTGGCAACAAGCGCCGCAGCGTATTGAA TCTGGATGGGCAATTACTGGATTACGCCCATGGCCGCAGCGGCGTAGTGCATCTGGTTTGGCCAAACTCGATGCGTGCAG GAGTGGAAAGCAAACTGACGTTAGTCCCGGATGAGAGCGGCAAATCACCGCGCACCCTCAGCTTCAGCGGTCCTTGGGCG CAGTTGCGGCTGATCAACGCCGGTGAACTGACCAATGTGGGCACCAACTCCTTCGATGTCCGCTTCAAGGTTGATGGCGG CGAGATGACGTACCGCATCTTTGTTGATGAATCCGACAACCCATTCGCGGGCGGTTTGTTCAGTAAATTCAGTCTGCCAG ACACTCTGTATTGA Protein sequence : MKLPFFIRIAKPAIPRLKASIPVVLALMACAALIWVWIYGPEWQLGENYPFETLLSRWLVTAVFVLVAVCWLSLKVMRRV QHLEKLQLQTKIQLDDPVSADIEQQNHYLNGWKHQLQRHLNTPEYLYRLPWYMVIGARNSGKSTLIKEGYKLTEISASER LHVEGAADLRVRCWLGEQAVIIDPAGVLIEQPTTPIAGKASLNSRLWQSLLSWLIEQRQRQPLNGIILTVDLHQMMTANK AQRETYVADIHQRLQEIRLSLHSQVPLYVVFTKMDLLYGFEAMYQSLDKAEREAVLGVTFSLNAADPDVWRTELKQFWQQ WVAQLNGAMPDMMLNSVDAGQRSQLFSFTRQMQGLHDYVVQLLEGILYRGEHAQPLLRGVYLTSAQQRGQMDDIFTQSAA VQYHLAPQAFPTWPVSDTTPYFTKALFNQVLLAEPNLAGENGIWLQKTRKRMFIFSGVGALAALTLWGYWHYYHQLNYRA GEEVLTQAKTFLSIPPPEGDDRYGNLQLPLLNPIRDATLAYGNYHERSPFLADMGLYQGNNIGPYVESTYLQLLQQRFVP ALMSGLLEQLNAAPKGSEEKLEILRVMRMLEDGSGRNAALVEQYMSHRWSQQFNGQRELQEQLSSHLNYALKHTDWHGAR ESGDQYAIKSFVPYLRPIQSAQQELSKLSIYQRVYQNLRIKAQDALPPALDLRDQIGASFDDIFVSGNDRLLVIPQFLTR SGLQSYFIKQNDQLVDLTVMDSWVLNLTKNVEYSEADRKEIHRQVTEQYLGDYTATWRAAMNNLSVSDFEGLPQAISAIE QVISGEQPFRRALQTLSDNTRLPVISDLIPAKEQQELLQKPDYLLLTRINREFSPETAVLVENGDKGSVIQSVYQKLTEL HRYLLAIQNSPAPGKAALKAVQLRLDQNNSDPIFEVQQLAKNLPEPLNRWVGELAEQAWRVVMMEAIQSLEVEWNETVIK QYQTYLAGRYPFDPHAKQDVPLSEFERFFGPKGTLDAFYQQNLKPFVENNLTGGSDGELLIRPDVLQQLAQARKIRDTFF SAQNGLGTQFAIEPVLLSGNKRRSVLNLDGQLLDYAHGRSGVVHLVWPNSMRAGVESKLTLVPDESGKSPRTLSFSGPWA QLRLINAGELTNVGTNSFDVRFKVDGGEMTYRIFVDESDNPFAGGLFSKFSLPDTLY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pmt1 | AAN64194.1 | Pmt1 | Not tested | macrophage toxin pathogenicity island | Protein | 0.0 | 69 |
| aec30 | AAQ96724.1 | Aec30 | Not tested | AGI-1 | Protein | 0.0 | 58 |
| aec30 | YP_851415.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 0.0 | 58 |
