Gene Information

Name : YPTS_0353 (YPTS_0353)
Accession : YP_001870799.1
Strain : Yersinia pseudotuberculosis PB1/+
Genome accession: NC_010634
Putative virulence/resistance : Virulence
Product : type III secretion protein SpaR/YscT/HrcT
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4791
EC number : -
Position : 388143 - 388937 bp
Length : 795 bp
Strand : +
Note : TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: ypi:YpsIP31758_3812 type III secretion apparatus protein SpaR/YscT/HrcT

DNA sequence : 
ATGACTGACGTCCTCCCCGGTCTGACCGCACTCGCATTAGCCATGATGCGGCCCTACGGTATCTTACTGATATTACCGCT
GTTTACCGCCCGCAGTTTGGGGAGCAGCTTATTGCGTAATGGCTTGATTGTTGCCATCGCGCTGCCGGTCACGCCGCTAT
TTTTATCCGCACCCATCATCACCAATAGTAGCCCGGTCACTTGGATTGGGGTGTTATGCACGGAGCTACTCATTGGGGTG
GTGATGGGGTTTGTCGCCGCATTGCCTTTCTGGGCTATGAATATGGCGGGTTTCCTGATCGATACCTTACGCGGGGCAAC
GATGTCCACGTTGTTTAACCCCGGTATGGGCGTCGAATCCTCCCTTTTTGGTGTGCTGTTTACCCAAATATTAACGGTAC
TGTTCCTGATTTCTGGCGGTTTTAATCAGGTGTTGGCGGCGTTGTACGGCTCGTACGATAGCTTACCCATCGGCCAGGGT
ATCCAGCCTGCTGCAGATCTATTGCTCTTTCTGCAAACTGAGTGGCAGATGATGTTCGAGCTTTGCTTGTGCTTTGCCCT
ACCGGCACTGCTGGTCATGGTGTTGGCTGATCTCTCTTTAGGATTAATTAACCGCTCGGCCCGGCAACTGAATGTCTTTT
TTCTGGCGATGCCCATTAAAAGCGCACTGGCGCTTTTTCTCTTACTGATCAGCCTGCCTTATGGCCTGCATCACTACCTG
TCCCGTATGAGCGATACTGAACAGAAGATTGGTACGTTGATCCCGTTGATTAAAGGGGGGAATGATGTCCACTGA

Protein sequence : 
MTDVLPGLTALALAMMRPYGILLILPLFTARSLGSSLLRNGLIVAIALPVTPLFLSAPIITNSSPVTWIGVLCTELLIGV
VMGFVAALPFWAMNMAGFLIDTLRGATMSTLFNPGMGVESSLFGVLFTQILTVLFLISGGFNQVLAALYGSYDSLPIGQG
IQPAADLLLFLQTEWQMMFELCLCFALPALLVMVLADLSLGLINRSARQLNVFFLAMPIKSALALFLLLISLPYGLHHYL
SRMSDTEQKIGTLIPLIKGGNDVH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0272 YP_002345354.1 type III secretion apparatus protein Virulence Not named Protein 4e-105 100
ssaT NP_456107.1 putative type III secretion protein Virulence SPI-2 Protein 1e-44 52
ssaT NP_805092.1 type III secretion protein Virulence SPI-2 Protein 1e-44 52
ssaT YP_216429.1 secretion system apparatus protein SsaT Virulence SPI-2 Protein 9e-45 52
ssaT NP_460386.1 type III secretion system apparatus protein Virulence SPI-2 Protein 3e-44 51
ssaT CAA68201.1 secretion system apparatus, SsaT Virulence SPI-2 Protein 2e-44 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_0353 YP_001870799.1 type III secretion protein SpaR/YscT/HrcT VFG0521 Protein 1e-44 51