|
Name : YPTS_0343 (YPTS_0343) Accession : YP_001870789.1 Strain : Yersinia pseudotuberculosis PB1/+ Genome accession: NC_010634 Putative virulence/resistance : Virulence Product : YscJ/HrcJ family type III secretion apparatus lipoprotein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4669 EC number : - Position : 379849 - 380580 bp Length : 732 bp Strand : + Note : TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; KEGG: ypi:YpsIP31758_3822 type III secretion apparatus lipoprotein, YscJ/HrcJ family DNA sequence : ATGAAATCTCTGCGGCAGATGTTAGCGATAGTCCTAATGACATTATCCCTTTCCGGTTGTGATATGGAGCTGTATAGCGG GCTGTCTGAGGGGGAGGCCAATCAAATGCTGGCATTGCTGATGCTGCACCAAATTAACGCCGAAAAACAGATCGAAAAGA GCGGGATGGTGGGGCTAACGGTCGATAAGCGGCAATTTATTAATGCCGTTGAGTTGCTACGACAGAATGGTTTCCCCCGA CAGCGTTTTATCACGGTGGATGAGCTGTTTCCTGCTAACCAGTTAGTGACCTCTCCCACGCAAGAGCAGGCCAAGATGGT TTTTCTGAAAGAACAGCAGTTGGAAAACATGTTGAGCCATATGGATGGGGTGATTCATGCCGATGTCACGGTGGCAATGC CTATGTCGGTTGACGGGAAAAACCCGCTTCCGCATACCGCCTCGGTGTTTATCAAGTATTCGCCGGAAGTCAATTTACAA AGCTATCAGTCGCAAATCAAAGGGTTGGTCCGCGATGCGGTTCCCGGTATTGATTACGCCAAGATAAGCGTAGTGATGCA GCCTGCGAACTACCGTTTCAGTGCCTCAGAGGCAGAGCAACAACAGGGGCCACAAACCACGGTGCAATGGCTATTACGCC ATGTAGGAATGGTGCAGAACATGGTGGGAGTGGCGTTTATCTCACTTATTGTATTGATGTTTGTAGGCTGGTTTTATTCT CGGCGTCGGTAA Protein sequence : MKSLRQMLAIVLMTLSLSGCDMELYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQFINAVELLRQNGFPR QRFITVDELFPANQLVTSPTQEQAKMVFLKEQQLENMLSHMDGVIHADVTVAMPMSVDGKNPLPHTASVFIKYSPEVNLQ SYQSQIKGLVRDAVPGIDYAKISVVMQPANYRFSASEAEQQQGPQTTVQWLLRHVGMVQNMVGVAFISLIVLMFVGWFYS RRR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YPO0263 | YP_002345344.1 | type III secretion system apparatus lipoprotein | Virulence | Not named | Protein | 3e-113 | 99 |
| ssaJ | CAA12196.1 | SsaJ | Virulence | SPI-2 | Protein | 5e-50 | 53 |
| ssaJ | YP_216417.1 | secretion system apparatus protein SsaJ | Virulence | SPI-2 | Protein | 6e-50 | 48 |
| ssaJ | NP_456119.1 | putative pathogenicity island lipoprotein | Virulence | SPI-2 | Protein | 2e-50 | 48 |
| ssaJ | NP_805080.1 | pathogenicity island lipoprotein | Virulence | SPI-2 | Protein | 2e-50 | 48 |
| ssaJ | NP_460374.1 | needle complex inner membrane lipoprotein | Virulence | SPI-2 | Protein | 2e-50 | 48 |
| ssaJ | CAA70532.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 1e-50 | 48 |
| escJ | YP_003236093.1 | T3SS structure protein EscJ | Virulence | LEE | Protein | 1e-36 | 41 |
| escJ | AAC38379.1 | EscJ | Virulence | LEE | Protein | 1e-36 | 41 |
| escJ | NP_290273.1 | hypothetical protein | Virulence | LEE | Protein | 1e-36 | 41 |
| escJ | AAC31518.1 | L0039 | Virulence | LEE | Protein | 1e-36 | 41 |
| ECs4573 | NP_312600.1 | EscJ | Virulence | LEE | Protein | 1e-36 | 41 |
| escJ | ACU09463.1 | EscJ protein | Virulence | LEE | Protein | 1e-36 | 41 |
| unnamed | AAL06364.1 | EscJ | Virulence | LEE | Protein | 2e-36 | 41 |
| lscJ | AAO18027.1 | LscJ | Virulence | TTSS locus | Protein | 1e-37 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| YPTS_0343 | YP_001870789.1 | YscJ/HrcJ family type III secretion apparatus lipoprotein | VFG0510 | Protein | 8e-51 | 48 |
| YPTS_0343 | YP_001870789.1 | YscJ/HrcJ family type III secretion apparatus lipoprotein | VFG0218 | Protein | 1e-37 | 42 |
| YPTS_0343 | YP_001870789.1 | YscJ/HrcJ family type III secretion apparatus lipoprotein | VFG0817 | Protein | 6e-37 | 41 |
| YPTS_0343 | YP_001870789.1 | YscJ/HrcJ family type III secretion apparatus lipoprotein | VFG0725 | Protein | 6e-37 | 41 |
