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Name : YPTS_3500 (YPTS_3500) Accession : YP_001873910.1 Strain : Yersinia pseudotuberculosis PB1/+ Genome accession: NC_010634 Putative virulence/resistance : Virulence Product : fimbrial biogenesis outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3906106 - 3908586 bp Length : 2481 bp Strand : - Note : PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: ypp:YPDSF_0481 outer membrane usher protein DNA sequence : ATGATAATAATTAAAAAAATTCCTATAGCAATGACTACATCATTGGTCATGTTCAGTGGAGCAGTCAGTGCTATTGATTT TAATACTGATGCAATGGATGCTAACGACAAACAGAATATTGATCTTTCTCATTTTACGAACGTTGGCTATATCATGCCGG GTGAGTATCGCTTGGAGATCAACGTCAATAATCACCGTATTCCCGAGCAGGTGATCGCTTTTTATGCCCGTGATGATGAA CCGAATAGCAGTGAGGTGTGCCTACCGGAAGCGGTGGTGGAACAGTTTGGTCTGAAGCCTGATGTGCTGCAAAAGATCAC ATTCTGGCATGAGGGGCAATGCGCAGATTTGCGTGAGCTGGCGGGATTAACCACGGAGGTTGATTTAGCGACCAGCACGT TAGCTATCAATGTTCCGCAAGACTGGATGGAATACAGTGACAGCAATTGGGTGCCGTCTTCTCAATGGGATGAGGGGATC CCTGGGTTTCTGTTGGATTACAACGTGAACTCGCTGTTTAGTAAGCCGAAAGAGAGTGGTTCCACCCGGAATATCAGCCT CAACGGTACGTTGGGTCTGAATGCGGGCCCCTGGCGGTTACGGGGCGATTATCAAGGGAACTACAGCCACAACAGTGGCG AGCAGAACTCGTCTACCAGTACATTTGACTGGAGCCGGATCTATATGTATCGGGCGATCAAGTCACTGGCAGCTACCTTG AGCGTTGGTGAAAACTATTTCGCCTCCAGCCTTTTCGATACGTTCCGTTATGCCGGAGCCAGTTTGTCCAGCGATGAACG TATGTTGCCACCTAATTTACGCGGTTATGCCCCTGAGGTTAGCGGGATAGCCAGAACCAACGCCAAAGTGACGGTCTCCC AGCAGGGGCGCATACTGTATCAAACCACGGTGGCCTCCGGTCCTTTTCGTATTCAGGAACTGAGCGATTCTGTTTCCGGG CGGCTGGATGTCAGCGTGGAGGAGCAGGATGGCACGGTACAAACTTTTCAGGTGGAGACGGCTGCGGTTCCCTATCTGAC CCGCCCTGGTGCAATCCGCTATAAAACGTCGGTGGGCCAGCCCTCAACGCTGAATCATGGGACGGAAGGCCCGGTCTTTG CCAGTGGCGAATTCTCTTGGGGGGTCAGTAATCGCTGGTCACTGTTTGGCGGGGCCATTGGCTCGGGTGATTACAATGCC GTGTCGGTTGGGGTTGGCCGTGATTTATATGCATTTGGTGCCATTTCAACGGATATCACCCAAACCCGTGCATCGGGCCT TCCCAACCAAGAGACGCAGAGCGGGAAATCGTTGCGCGTCAGGTATGCCAAGCGCTTTGATGAACTGAACAGTGATATCT CGCTGGCGGGGAACCGTTTTTTTGAACGTGAATTCATGTCGATGAATCAGTATCTCGGCACCCGTTATTTCGATAATGAC CTTGGGCGCAACAAGGAAATGTATACGGTGACGGCGAGTAAAAATTTTCCTGATATCCAGACCAATATCAATTTTTCATA CAGTTACCAGAATTATTGGGATCAGCCCACGTCCAACAGCTACAGCGCGACGGTCAGCCACGCTTTTGATGCTTTTTCTC TCAAAGATATGACGGTCAACCTTTCTGCCAGCCGTAGCAAAAATAACGGCGTGAATGATGATGTGCTGTATCTGAGTTTT TCGGTGCCATTAGGCAATCAACAAACCCTCAGCTACAGCGGGCAACATAATGGTCAAGGGAACAACCAGACCGTGAATTA TTCTAACAGCTCGGCTATCGATAGCAGCTACCGGTTATCCGCAGGGGTTAACAACAGCAATGATAATGGTGCGCGCGGCC AGTTCAGCGGTTTTTATATTCATCGCAGCAGCATTGCTGAAACCAGCCTTAATGTCGCTTATGCGCAGGATGATTTTACC TCGACCGGGGTTTCTATGCGCGGGGGCGCGACGGTTACTGCGAAAGGTGCGGCATTACACGGCCCCGGTATGAGTGGCGG TACCCGCCTGATGGTCAATACCGATGATATTGCAGGCGTCCCGCTGGAAGAGCGGAATATTCGTTCAAACCGTTTTGGTA TTGCTGTGCTGAATAATATTAACAGCTACTACCGTACAGATACGCGTATCGATATCAATCAGTTGGCTGATGATGTTGAA GTTAAGCAGTCTGCGGTGGAGTTCGCCCTGACCGAAGGGGCTATTGGTTATCGCCGTTTCGCCATGATGAAAGGGGAGAA GGTACTGGCAACCATCAGCCTGACCGACAGTAGCCATCCGCCTTTTGGTAGTTTGGTCATCAGTGCCAAAGGGCAGGAAC TGGGGATCGTTAGCGATGACGGTTTTACTTACCTGAGTGGAGTGGAGCCAGGAGAAACACTGGATGTCGTTTGGAGTGGT GCTAAGCAGTGCCAGGTGGCGATCCCAGCAGTAATACAGCCGCAGGCGCAAATATTATTACCCTGCATATCCGTTAACTA A Protein sequence : MIIIKKIPIAMTTSLVMFSGAVSAIDFNTDAMDANDKQNIDLSHFTNVGYIMPGEYRLEINVNNHRIPEQVIAFYARDDE PNSSEVCLPEAVVEQFGLKPDVLQKITFWHEGQCADLRELAGLTTEVDLATSTLAINVPQDWMEYSDSNWVPSSQWDEGI PGFLLDYNVNSLFSKPKESGSTRNISLNGTLGLNAGPWRLRGDYQGNYSHNSGEQNSSTSTFDWSRIYMYRAIKSLAATL SVGENYFASSLFDTFRYAGASLSSDERMLPPNLRGYAPEVSGIARTNAKVTVSQQGRILYQTTVASGPFRIQELSDSVSG RLDVSVEEQDGTVQTFQVETAAVPYLTRPGAIRYKTSVGQPSTLNHGTEGPVFASGEFSWGVSNRWSLFGGAIGSGDYNA VSVGVGRDLYAFGAISTDITQTRASGLPNQETQSGKSLRVRYAKRFDELNSDISLAGNRFFEREFMSMNQYLGTRYFDND LGRNKEMYTVTASKNFPDIQTNINFSYSYQNYWDQPTSNSYSATVSHAFDAFSLKDMTVNLSASRSKNNGVNDDVLYLSF SVPLGNQQTLSYSGQHNGQGNNQTVNYSNSSAIDSSYRLSAGVNNSNDNGARGQFSGFYIHRSSIAETSLNVAYAQDDFT STGVSMRGGATVTAKGAALHGPGMSGGTRLMVNTDDIAGVPLEERNIRSNRFGIAVLNNINSYYRTDTRIDINQLADDVE VKQSAVEFALTEGAIGYRRFAMMKGEKVLATISLTDSSHPPFGSLVISAKGQELGIVSDDGFTYLSGVEPGETLDVVWSG AKQCQVAIPAVIQPQAQILLPCISVN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 0.0 | 50 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 0.0 | 49 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 0.0 | 49 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 0.0 | 49 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 0.0 | 49 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 0.0 | 49 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 0.0 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| YPTS_3500 | YP_001873910.1 | fimbrial biogenesis outer membrane usher protein | VFG1548 | Protein | 0.0 | 49 |
| YPTS_3500 | YP_001873910.1 | fimbrial biogenesis outer membrane usher protein | VFG0884 | Protein | 0.0 | 49 |
| YPTS_3500 | YP_001873910.1 | fimbrial biogenesis outer membrane usher protein | VFG0895 | Protein | 0.0 | 49 |
