Gene Information

Name : YPTS_3499 (YPTS_3499)
Accession : YP_001873909.1
Strain : Yersinia pseudotuberculosis PB1/+
Genome accession: NC_010634
Putative virulence/resistance : Virulence
Product : Pili assembly chaperone, N-terminal
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 3905369 - 3906088 bp
Length : 720 bp
Strand : -
Note : PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: ypi:YpsIP31758_0615 chaperone protein PapD

DNA sequence : 
ATGAAGAAGCTCTCATTAATCGCGTTGACCAGCACAGTGGTATTCACCAGTTATACCGCCAATGCCGCGATTGCATTAGA
TCGGACGCGAATTATTTATAACGGGCAGGATAAGTCCATCAGCCTGAATATCAGCAATGAAAATAAGACACTGCCTTATT
TAGCACAGGCATGGATTGAGAATGAACAACAGCAAAAAGTCACCACCCCGTTAGTGGCAACGCCGCCGGTTCAACGGGTG
GAAGCGGGTAAGAAAAGCGCGGTACGTATCTCTGCCACCCCTGAGGCGCTGAAATTGCCACAAGATCGCGAGTCACTGTT
CTACTTCAATCTGCGTGAAATTCCGCCTCGCAGTGAAAAATCCAATGTCATGCAGATTGCCTTACAAACCAAAATCAAAC
TGTTCTACCGACCAGAAGGGATTACCCCTGCCCCGGGCCAAATTTGGCAGGAACAACTGGTTCTGCATAAAACGGCGCAA
GGTTTTCGGCTAGAGAACCCCACTCCCTATTACATTACGGTCGTTGGGCTGGCGGAGAAAGGTAAGTCATCGGCTGACAG
CAATTTTCAACCTTTGATGGTTGCGCCCAAATCCAGTGCTGAGCTGAAATCTGCCAGTTTCACCGCCCCCGTCCTGACCT
ACATTAATGATTATGGTGGTCGACCAGAACTGAGTTTTAGTTGCAGTGGCAGCATTTGCCGGGCAGCTAAAACGATTTAA

Protein sequence : 
MKKLSLIALTSTVVFTSYTANAAIALDRTRIIYNGQDKSISLNISNENKTLPYLAQAWIENEQQQKVTTPLVATPPVQRV
EAGKKSAVRISATPEALKLPQDRESLFYFNLREIPPRSEKSNVMQIALQTKIKLFYRPEGITPAPGQIWQEQLVLHKTAQ
GFRLENPTPYYITVVGLAEKGKSSADSNFQPLMVAPKSSAELKSASFTAPVLTYINDYGGRPELSFSCSGSICRAAKTI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papD NP_755464.1 PapD protein Virulence PAI I CFT073 Protein 1e-66 63
pixD CAE85158.1 PixD protein Not tested PAI V 536 Protein 4e-74 62
prfD CAD42028.1 PrfD protein Virulence PAI II 536 Protein 7e-75 60
papD AAZ04423.1 P pilus chaperone Virulence PAI I APEC-O1 Protein 6e-75 59
papD_2 NP_757033.1 PapD protein Virulence PAI II CFT073 Protein 1e-74 59
papD YP_002414014.1 Chaperone protein PapD Not tested Not named Protein 1e-74 59
papD YP_854253.1 pilus assembly protein chaperone PapD Virulence PAI I APEC-O1 Protein 8e-75 59
papD AAL67413.1 PapD Virulence PAI II CFT073 Protein 9e-75 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_3499 YP_001873909.1 Pili assembly chaperone, N-terminal VFG0885 Protein 6e-67 63
YPTS_3499 YP_001873909.1 Pili assembly chaperone, N-terminal VFG1547 Protein 4e-75 60
YPTS_3499 YP_001873909.1 Pili assembly chaperone, N-terminal VFG0896 Protein 5e-75 59