Gene Information

Name : fliP (YPTS_3489)
Accession : YP_001873899.1
Strain : Yersinia pseudotuberculosis PB1/+
Genome accession: NC_010634
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : 3.1.1.3
Position : 3895142 - 3895912 bp
Length : 771 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGAGCCGCAGCCTTCGAGCGATAACACCGGTAGCTATCATCAGCCGCGGCCTGCTGGTGGGCGGGCTGCTGTATTCCCC
TCTTCTGCTGGCGCAGGAGGGGGGGATCACCCTGTTCAATACCGTACAAACCGCAACGGGCCAAGATTACAACGTTAAGA
TTGAAATCCTGATCCTGATGACCCTGCTCGGTTTGTTGCCGATTATGATGCTGATGATGACCTGCTTTACCCGCTTTATT
ATTGTGCTGGCGATATTGCGTCAGGCACTGGGGTTACAGCAAAGCCCGCCGAATAAAGTCCTGACCGGTATCGCCCTCGC
CCTGACCTTGCTGGTTATGCGCCCGGTGTGGACCAAAATTCATCAGGATGCGGTCATTCCTTTCCAACAGGATGAAATTA
CGCTTTCGCAGGCTCTGGGCCGCGCAGAAGCGCCGTTGAAGAACTATATGCTCGCGCAGACCAGTACTAAATCACTGGAT
CAAATGATGGCTATCGCCCAAGTCAGTGGCGAGCCACAACAGCAGGATTTGAGCGTGGTCACCCCCGCTTATGTGCTCAG
TGAGCTGAAAACCGCTTTCCAGATGGGCTTTATGATTTATATCCCTTTTCTGGTGATTGACCTGATTGTGGCCAGTATTT
TGATGGCGATGGGAATGATGATGCTATCGCCCTTAATTGTCTCATTGCCATTTAAATTAATGCTGTTCGTCTTGTGTGAT
GGCTGGACATTAATGGTTGGCACCCTCACTGCCAGCGTTCAGGGGCTATAG

Protein sequence : 
MSRSLRAITPVAIISRGLLVGGLLYSPLLLAQEGGITLFNTVQTATGQDYNVKIEILILMTLLGLLPIMMLMMTCFTRFI
IVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHQDAVIPFQQDEITLSQALGRAEAPLKNYMLAQTSTKSLD
QMMAIAQVSGEPQQQDLSVVTPAYVLSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCD
GWTLMVGTLTASVQGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-29 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-29 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-29 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-29 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 4e-31 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 4e-23 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-23 41
ysaR AAS66846.1 YsaR Not tested SSR-1 Protein 5e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_001873899.1 flagellar biosynthesis protein FliP VFG1259 Protein 4e-52 55
fliP YP_001873899.1 flagellar biosynthesis protein FliP VFG2494 Protein 8e-44 54
fliP YP_001873899.1 flagellar biosynthesis protein FliP VFG2016 Protein 9e-47 53
fliP YP_001873899.1 flagellar biosynthesis protein FliP VFG2338 Protein 5e-44 53
fliP YP_001873899.1 flagellar biosynthesis protein FliP VFG0044 Protein 2e-29 44
fliP YP_001873899.1 flagellar biosynthesis protein FliP VFG1773 Protein 6e-28 41