Gene Information

Name : YPTS_0336 (YPTS_0336)
Accession : YP_001870782.1
Strain : Yersinia pseudotuberculosis PB1/+
Genome accession: NC_010634
Putative virulence/resistance : Virulence
Product : YscC/HrcC family type III secretion outer membrane protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1450
EC number : -
Position : 375249 - 376766 bp
Length : 1518 bp
Strand : +
Note : TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: ypi:YpsIP31758_3830 type III secretion outer membrane pore, YscC/HrcC family

DNA sequence : 
ATGTCGCTAATCTATATCATGAGAAAAATAACGGGTCTGATATTACTTTTTTTTGCCACATTGTTGCCTTATGGGAAATT
TTCTTATGGAAAAGCGATTCCTTGGCAAGGCGAGCCTTTTTTTATTTATAGCCGAGGCATGACAGTTTCTGAATTATTAA
AAGATTTGGGGATGAATTACGGTATTCCTGTGGTGATCAGTTCGGAAATAAACGAGCACTTTACTGGAAAGATTAGGGAT
AAGACACCTGAAAAAATCCTATCGGAGTTGGCTGGGCGATATAATATAACGTGGTATTACGATGGTGAAACACTCTATTT
TTACCCAGTTCAATCAATCAAGCGGGAGTTTATATCCCCCGATGGTCTGGCTGCCAATACGTTAGTTAAATATCTCCAGC
GCGGTGACGTGCTGGCGGGGAAAAACTGTGCCATAAAAGCGATCCCCCACCTTGATACCCTTGAGGTCAAGGGAGTGCCT
ATCTGCATCGAACGCGTAAAGTCAGTAAGCAAAATGCTTTCTGAGCAAGTTCGTCACCAAAACCAAAATAAAGAAACAGT
GAAAGTTTTCCCGCTGAAATATGCTTCAGCAGCGGATTCAGATTATCAGTACCGAGATCAAAACGTCAGATTACCGGGGT
TGGTCAGTGTGTTACGTGAGTTGAACCAAGGGAATAATTTGCCTTTGGCGGGCGGTAACCAACCAGATGGAAATCAAGCA
AGCTCACCGGTGTTTTCGGCTGATCCTCGGCAAAATGCCGTCATTATTCGCGATCGCCAGGCTAATATGCCGATTTATCG
CAGCTTGATTACCCAACTGGATCAGCGGCCAATTCAGATAGAAATTTCTGTCACTATTATTGATGTTGATGCGGGAGATA
TCAGCCAACTGGGTGTTGATTGGTCTGCATCTGCTTCTATTGGTGGAACGGGGGTCTCATTTAATAGCACCTTCGCCAAG
AATAATGCTGAAGGCTTTTCTACCGTGATTGGTGATACGGGGAACTTTATGGTTCGTCTGAATGCGTTACAAAAAAATTC
ACGAGCCAGAATTTTATCTCAACCTTCAGTGGTGACCCTGAACAATATTCAGGCGGTACTGGATAAAAACGTGACGTTTT
ATACCAAGCTGCAAGGTGAGAAAGTGGCCAAACTTGAATCTGTCACTTCAGGGTCATTACTGCGAGTGACGCCAAGAATG
ATCGAGACCGAAGGGGTACAAGAGGTTTTACTTAATCTCAATATTCAGGATGGTCAGCAGCAAGCTTCTACCAATAGTAA
TGAGCCATTACCCGAAATACGAAACTCAGATATTTCGACGCAGGCCACGCTACAGGTTGGACAAAGTTTACTCTTGGGCG
GATTTATTCAGGACACGCAGATTGAGTCACAAAATAAAATTCCTTTACTGGGCGATATTCCGCTATTAGGTGGGTTGTTC
CGTAGTACAGATAAACAATCTCACAGCGTGGTCAGACTCTTCCTGATCAAGGCCGTTCCGGTTAATGCAGGGGAATAA

Protein sequence : 
MSLIYIMRKITGLILLFFATLLPYGKFSYGKAIPWQGEPFFIYSRGMTVSELLKDLGMNYGIPVVISSEINEHFTGKIRD
KTPEKILSELAGRYNITWYYDGETLYFYPVQSIKREFISPDGLAANTLVKYLQRGDVLAGKNCAIKAIPHLDTLEVKGVP
ICIERVKSVSKMLSEQVRHQNQNKETVKVFPLKYASAADSDYQYRDQNVRLPGLVSVLRELNQGNNLPLAGGNQPDGNQA
SSPVFSADPRQNAVIIRDRQANMPIYRSLITQLDQRPIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNSTFAK
NNAEGFSTVIGDTGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKLQGEKVAKLESVTSGSLLRVTPRM
IETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNSDISTQATLQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLF
RSTDKQSHSVVRLFLIKAVPVNAGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0257 YP_002345337.1 type III secretion protein Virulence Not named Protein 0.0 99
spiA AAC44301.1 SpiA Virulence SPI-2 Protein 5e-118 53
spiA NP_456134.1 putative outer membrane secretory protein Virulence SPI-2 Protein 2e-117 53
spiA NP_805065.1 outer membrane secretory protein Virulence SPI-2 Protein 2e-117 53
ssaC YP_216402.1 secretion system apparatus protein SsaC Virulence SPI-2 Protein 1e-117 53
ssaC NP_460359.1 outer membrane secretin precursor Virulence SPI-2 Protein 6e-118 53
escC AAC38377.1 EscC Virulence LEE Protein 8e-107 49
escC YP_003223482.1 T3SS structure protein EscC Virulence LEE Protein 5e-108 49
escC YP_003232146.1 T3SS structure protein EscC Virulence LEE Protein 5e-108 49
escC AAK26708.1 EscC Virulence LEE Protein 4e-108 49
escC AAL57535.1 EscC Virulence LEE Protein 4e-108 49
escC CAC81855.1 EscC protein Virulence LEE II Protein 4e-108 49
escC YP_003236095.1 T3SS structure protein EscC Virulence LEE Protein 2e-107 49
escC CAI43881.1 EscC protein Virulence LEE Protein 4e-108 49
ECs4575 NP_312602.1 EscC Virulence LEE Protein 9e-108 49
escC AAC31520.1 L0041 Virulence LEE Protein 7e-108 49
escC ACU09465.1 type III secretion outer membrane pore YscC/HrcC family Virulence LEE Protein 7e-108 49
escC NP_290275.1 hypothetical protein Virulence LEE Protein 9e-108 49
escC AFO66299.1 putative type III complex subunit Virulence SESS LEE Protein 1e-109 49
escC AFO66408.1 putative type III complex subunit Virulence SESS LEE Protein 1e-109 49
unnamed AAL06362.1 EscC Virulence LEE Protein 8e-108 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_0336 YP_001870782.1 YscC/HrcC family type III secretion outer membrane protein VFG0495 Protein 3e-118 53
YPTS_0336 YP_001870782.1 YscC/HrcC family type III secretion outer membrane protein VFG0723 Protein 5e-107 49
YPTS_0336 YP_001870782.1 YscC/HrcC family type III secretion outer membrane protein VFG0819 Protein 4e-108 49