Gene Information

Name : YPTS_3370 (YPTS_3370)
Accession : YP_001873782.1
Strain : Yersinia pseudotuberculosis PB1/+
Genome accession: NC_010634
Putative virulence/resistance : Unknown
Product : IS1 transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1662
EC number : -
Position : 3724949 - 3725317 bp
Length : 369 bp
Strand : -
Note : PFAM: IS1 transposase; KEGG: ypi:YpsIP31758_0741 IS1 family transposase orfB

DNA sequence : 
ATGTGGTCATTTGTGGGCAACAAAAAGCAGCAACGTTGGCTTTGGTATGCCTGGGAGCCTCGCCTCAAACGTATTATTGC
TCATGTTTTTGGTCGTCGGAGCAAAAAGACATTTCGCCAATTATTGGGGTTGCTGTCAGGTTTCAATATCGTCTTCTGGT
GTACCGACAACTTCAGTGCTTATGAGATGTTGCCGGATGAAAAACACATCAGGAGCAAGCTTTACACGCAGCGGATTGAG
CGTGAAAACCTGAATATCCGTAATCGGTTGAAACGACTGAACCGCAAGACTCTCGGAGACTCAAAGTCGGCAGAAATGCA
TGACAGAATCATCGGTACGTTCATTGAGCGTGAGCATTACCTAGTGTGA

Protein sequence : 
MWSFVGNKKQQRWLWYAWEPRLKRIIAHVFGRRSKKTFRQLLGLLSGFNIVFWCTDNFSAYEMLPDEKHIRSKLYTQRIE
RENLNIRNRLKRLNRKTLGDSKSAEMHDRIIGTFIEREHYLV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 9e-16 51
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 1e-15 50
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 1e-15 50
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 1e-15 50
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 1e-15 50
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 1e-15 50
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 2e-15 50
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 9e-16 50
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 2e-15 50
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 2e-15 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_3370 YP_001873782.1 IS1 transposase VFG0612 Protein 5e-16 50