Gene Information

Name : YPTS_2424 (YPTS_2424)
Accession : YP_001872842.1
Strain : Yersinia pseudotuberculosis PB1/+
Genome accession: NC_010634
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2688481 - 2689374 bp
Length : 894 bp
Strand : +
Note : PFAM: transport system permease protein; ABC-3 protein; KEGG: ypp:YPDSF_0710 chelated iron transport system membrane protein

DNA sequence : 
ATGAATATGCTGTTCAGTTTGATCAGTGAGCCATTCGCCTACCCCTTTATGCAGCGGGCAATTGTCGCGGCAATCGTCAC
TGGTGTGGTCTGCGCGATACTCTCTTGCTACCTGGTACTCAAAGGGTGGTCGCTAATGGGAGATGCTATTTCTCATGCTG
TGCTGCCAGGGATTGTTCTGGCTTTTTGGCTCGGTATCCCTCTGGTCATCGGCGCTTTTGTCTCAGGGATATTTTGTGCC
GTGGCAACTGGCTATTTAAAAGAAAACAGCCGGGTTAAAGAAGATACCGTCATGGGGATTGTTTTTTCTGGCATGTTCGC
GTTCGGCTTAGTGCTGTTCTCCCGTATAGATACTGACCAGCACCTCAGCCACATTTTGTTCGGTAACATGCTGGGGATTT
CGCTGACAGAACTGAAACAGACCCTGTGGATCGCAGGTTTCACGCTATTGGTGGTGTTACTAAAGCGCAAAGACTTTATG
TTGTACTGTTTCGATCCAAACCATGCGCGGGTTATCGGGCTACCCGTTAAGTTTCTGCATTACGGTTTACTTTGCTTACT
GGCATTGACTATCGTCGCGTCATTGCAGGCAGTTGGCGTTATTCTCGTCATCGCCATGTTGATAGCGCCGGGTATTATCG
CCTTTATGATTTGTCGTAGTTTTGATCAAATGCTGGTTGTCGCGACACTGGTTTCAGTGGTCGCCTGTGTTTTAGGTACA
TTAATCAGTTTTCATATTGATGGTGCAACAGGCCCATGCATCGTGATTATTCAAGCTTTATTCTTTGTTGTCGCCCTCAT
TTACAACCATATAAAACCGATTAAAGACCGAAAAATGGCACCACTCACCAAGGCAGTAAATCCAGAAAATACAGCCCCAA
GTAACCTGCCATAG

Protein sequence : 
MNMLFSLISEPFAYPFMQRAIVAAIVTGVVCAILSCYLVLKGWSLMGDAISHAVLPGIVLAFWLGIPLVIGAFVSGIFCA
VATGYLKENSRVKEDTVMGIVFSGMFAFGLVLFSRIDTDQHLSHILFGNMLGISLTELKQTLWIAGFTLLVVLLKRKDFM
LYCFDPNHARVIGLPVKFLHYGLLCLLALTIVASLQAVGVILVIAMLIAPGIIAFMICRSFDQMLVVATLVSVVACVLGT
LISFHIDGATGPCIVIIQALFFVVALIYNHIKPIKDRKMAPLTKAVNPENTAPSNLP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-64 54
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-64 54
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-64 53
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-64 52
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-64 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_2424 YP_001872842.1 ABC-3 protein BAC0442 Protein 4e-130 100
YPTS_2424 YP_001872842.1 ABC-3 protein BAC0352 Protein 1e-64 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_2424 YP_001872842.1 ABC-3 protein VFG0528 Protein 1e-64 52