Gene Information

Name : YPTS_2423 (YPTS_2423)
Accession : YP_001872841.1
Strain : Yersinia pseudotuberculosis PB1/+
Genome accession: NC_010634
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2687600 - 2688484 bp
Length : 885 bp
Strand : +
Note : PFAM: transport system permease protein; ABC-3 protein; KEGG: ypi:YpsIP31758_1703 chelated iron ABC transporter, permease protein YfeC

DNA sequence : 
ATGCTGGAACTTTTACTGCAACCGTTTAATTATAATTATATGGTCAAGGCCATTTGGGTTAGTGCGATTGTGGGGGCCGT
TTGTGCTTTTCTATCCGCTTATCTGATGCTAAAAGGCTGGTCGCTGATGGGTGATGCGTTATCACACTCAGTCGTGCCTG
GGGTTGCAGGGGCTTATGCTCTTGGCTTTCCCTATGCCGCTGGCGCTTTCTTTACGGGTATGCTTGCCGCCTTGGCAATG
ACGCTAGTACGCCACATTACCCGCCTACGTGAAGATGCCATTATCGGTTTTATCTTTTCTACCTTTTTTGCTGTTGGGCT
TTTAATCGTTTCACTCAATCCCACATCAGTGAATGTTCAGTCGATCATCTTCGGCAATATTCTGGGTATTGCTGATGAAG
ATGTCTTGCAGGTAGAAATCATTATTTTGGTTTCTTTTGTGATTTTATGTTTGATCTGGAAAGATTTATTAGCGGTGTTT
TTCGATGAAAGCCACGCCATGTCAATTGGTTTATCCCCACTGCGCTTAAAAATCTTATTCTTTACGCTCCTGAGCGCCTG
TACTGTCGCCGCTTTACAAACCGTGGGGGCCATTTTAGTGATAGCTATGGTCGTCACTCCAGGGGCAACAGCCTATTTAC
TGACCGATCGTTTCGGCCGCTTGCTCATTATTGCCATTGCTATTGGGGCCATTACCAGTGCTTTCGGCGCGTATCTCAGT
TTTTATCTGGATGGGGCAACCGGTGGCGTTATTGTCACCTTACAAACACTGGTATTCCTGCTGGCCTTCTTCTTTGCCCC
CAAACACGGATTACTGGCAACCCGATACCGCACACGGTTGAAACGTCGTCATCCGCCGGTTCATCTTCCGGAGGATAACC
TATGA

Protein sequence : 
MLELLLQPFNYNYMVKAIWVSAIVGAVCAFLSAYLMLKGWSLMGDALSHSVVPGVAGAYALGFPYAAGAFFTGMLAALAM
TLVRHITRLREDAIIGFIFSTFFAVGLLIVSLNPTSVNVQSIIFGNILGIADEDVLQVEIIILVSFVILCLIWKDLLAVF
FDESHAMSIGLSPLRLKILFFTLLSACTVAALQTVGAILVIAMVVTPGATAYLLTDRFGRLLIIAIAIGAITSAFGAYLS
FYLDGATGGVIVTLQTLVFLLAFFFAPKHGLLATRYRTRLKRRHPPVHLPEDNL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 7e-80 66
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-80 66
sitC NP_461784.1 permease Virulence SPI-1 Protein 9e-80 66
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-80 66
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-80 66
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-44 43
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-44 43
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-44 43
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-44 43
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-44 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_2423 YP_001872841.1 ABC-3 protein BAC0441 Protein 1e-124 99
YPTS_2423 YP_001872841.1 ABC-3 protein BAC0351 Protein 4e-80 66
YPTS_2423 YP_001872841.1 ABC-3 protein BAC0352 Protein 1e-44 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_2423 YP_001872841.1 ABC-3 protein VFG0527 Protein 4e-80 66
YPTS_2423 YP_001872841.1 ABC-3 protein VFG0528 Protein 1e-44 43