Gene Information

Name : YPTS_2018 (YPTS_2018)
Accession : YP_001872441.1
Strain : Yersinia pseudotuberculosis PB1/+
Genome accession: NC_010634
Putative virulence/resistance : Unknown
Product : Integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4584
EC number : -
Position : 2231612 - 2232634 bp
Length : 1023 bp
Strand : -
Note : PFAM: Integrase catalytic region; Resolvase helix-turn-helix domain protein; KEGG: yps:YPTB3875 putative transposase

DNA sequence :
ATGGTCACTTTTGAGACAGTTATGGAAATTAAAATCCTGCACAAGCAGGGAATGAGTAGCCGGGCGATTGCCAGAGAACT
GGGGATCTCCCGCAATACCGTTAAACGTTATTTGCAGGCAAAATCTGAGCCGCCAAAATATACGCCGCGACCTGCTGTTG
CTTCACTCCTGGATGAATACCGGGATTATATTCGTCAACGCATCGCCGATGCTCATCCTTACAAAATCCCGGCAACGGTA
ATCGCTCGCGAGATCAGAGACCAGGGATATCGTGGCGGAATGACCATTCTCAGGGCATTCATTCGTTCTCTCTCGGTTCC
TCAGGAGCAGGAGCCTGCCGTTCGGTTCGAAACTGAACCCGGACGACAGATGCAGGTTGACTGGGGCACTATGCGTAATG
GTCGCTCACCGCTTCACGTGTTCGTTGCTGTTCTCGGATACAGCCGAATGCTGTACATCGAATTCACTGACAATATGCGT
TATGACACGCTGGAGACCTGCCATCGTAATGCGCTCCGCTTCTTTGGTGGTGTGCCGCGCGAAGTGTTGTATGACAATAT
GAAAACTGTGGTTCTGCAACGTGACGCATATCAGACCGGTCAGCACCGGTTCCATCCTTCGCTGTGGCAGTTCGGCAAGG
AGATGGGCTTCTCTCCCCGACTGTGTCGCCCCTTCAGGGCACAGACTAAAGGTAAGGTGGAACGGATGGTGCAGTACACC
CGTAACAGTTTTTACATCCCACTAATGACTCGCCTGCGCCCGATGGGGATCACTGTCGATGTTGAAACAGCCAACCGCCA
CGGTCTGCGCTGGCTGCACGATGTCGCTAACCAACGAAAGCATGAAACAATCCAGGCCCGTCCCTGCGATCGCTGGCTCG
AAGAGCAGCAGTCCATGCTGGCACTGCCTCCGGAGAAAAAAGAGTATGACGTGCATCTTGATGAAAATCTGGTGAACTTC
GACAAACACCCCCTGCATCATCCACTCTCCATCTACGACTCATTCTGCAGAGGAGTGGCGTGA

Protein sequence :
MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATV
IAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMR
YDTLETCHRNALRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYT
RNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNF
DKHPLHHPLSIYDSFCRGVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 3e-164 99
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 4e-164 99
api83 CAF28557.1 transposase Not tested YAPI Protein 3e-164 99
unnamed CAA21403.1 - Not tested HPI Protein 4e-164 99
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 1e-162 99
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 3e-163 99
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 3e-163 99
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 3e-163 99
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 4e-164 99
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 3e-163 99
y2411 NP_669718.1 transposase Not tested HPI Protein 4e-164 99
unnamed AAG37051.1 unknown Not tested espC PAI Protein 3e-153 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_2018 YP_001872441.1 Integrase catalytic subunit VFG1607 Protein 2e-163 99
YPTS_2018 YP_001872441.1 Integrase catalytic subunit VFG1461 Protein 8e-163 99
YPTS_2018 YP_001872441.1 Integrase catalytic subunit VFG1514 Protein 2e-163 99
YPTS_2018 YP_001872441.1 Integrase catalytic subunit VFG1626 Protein 2e-163 99
YPTS_2018 YP_001872441.1 Integrase catalytic subunit VFG0780 Protein 2e-153 96