Gene Information

Name : YPTS_1994 (YPTS_1994)
Accession : YP_001872417.1
Strain : Yersinia pseudotuberculosis PB1/+
Genome accession: NC_010634
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2203530 - 2204243 bp
Length : 714 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ypi:YpsIP31758_2136 ABC transporter, ATP-binding protein

DNA sequence : 
ATGACCTCGTCAATCATAGGGATGAAACCTGAACATCTGGCTGATGCCGTTATTGAAACCCGACATTTGTATAAGCGCTT
TGGTCAAGTTACGGCACTGGAAGACATCAATATTCGTATTAACCGTGGTGAGTTTGTGGCGATTATGGGGGCATCAGGCT
CGGGAAAAACGACATTAATGAATATCCTGACTTGCCTGGATACGGTAAGTGAAGGCCAAGTATTACTCGACGGAATTGAT
GCCGCAGGTTTGGATGAAGAGGGCCGCCGACAATTTAGAGCCGATAAGATAGGGTTGGTCTTCCAGCAATTTCACCTTAT
TCCTTACCTTACTGCCTTAGAAAATATCATGTTGGCCCAGCATTATCACAGTGTGGTCGATGAAGAGGCCGCCAGACAAG
TATTGGAACAAGTGGGGATGACACCACGTATGGGCCATTTACCTAGCCAACTATCCGGTGGCGAACAGCAACGGGTATGT
ATTGCACGGGCGTTGGTGAATCAACCGCCGATCATTTTTGCCGATGAACCGACCGGCAACCTGGATGAAGAGAATGAACA
GCGAGTCTTGGAATTGCTAAACCATATCCATCGTCAAGGCCGTACTATTGTCATGGTGACCCATAATCCAGATTTAGGCT
GTGTTGCTGACCGGGTTATCCGGCTGCAACATGGTAAATATCTTGATGAAAAGAGCCGCCATCATGTGGCGTAA

Protein sequence : 
MTSSIIGMKPEHLADAVIETRHLYKRFGQVTALEDINIRINRGEFVAIMGASGSGKTTLMNILTCLDTVSEGQVLLDGID
AAGLDEEGRRQFRADKIGLVFQQFHLIPYLTALENIMLAQHYHSVVDEEAARQVLEQVGMTPRMGHLPSQLSGGEQQRVC
IARALVNQPPIIFADEPTGNLDEENEQRVLELLNHIHRQGRTIVMVTHNPDLGCVADRVIRLQHGKYLDEKSRHHVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-28 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-29 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-29 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-29 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_1994 YP_001872417.1 ABC transporter-like protein NC_008702.1.4606598. Protein 7e-32 45
YPTS_1994 YP_001872417.1 ABC transporter-like protein NC_012469.1.7686878. Protein 2e-41 44
YPTS_1994 YP_001872417.1 ABC transporter-like protein NC_012469.1.7685735. Protein 2e-39 44
YPTS_1994 YP_001872417.1 ABC transporter-like protein CP001581.1.gene798.p Protein 1e-34 42