Gene Information

Name : YPTS_1211 (YPTS_1211)
Accession : YP_001871643.1
Strain : Yersinia pseudotuberculosis PB1/+
Genome accession: NC_010634
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1355589 - 1356830 bp
Length : 1242 bp
Strand : -
Note : CP4-57 prophage; integrase

DNA sequence : 
ATGGCAAGACAAACCAAGCCGTTAACCGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTGTATGA
TGGTGACGGGCTGACCCTGTTAATTAAATCCAGCGGAAGTAAGCTCTGGCAGTTCCGTTACTACCGACCTCTTACAAAGC
TGCGCACCAAACAAAGTTTTGGTGCCTACCCTGCCGTATCTCTTTCTGATGCACGTAAACTTAGAGCAGAATCCCGATCG
TTACTGGCAAAAGAGATTGATCCTCAGGAACATCAGAAAGAACAGGTAAGAAATTCTCATGAGGCAAAAACCAACACATT
TTTGCTGGTTGCAGAGCGCTGGTGGTATCTAAAGAAAGCAAGCGTAACAGAGGATTATGCTCAGGATATCTGGCGATCGC
TTGAGAGAGATGTTTTTCCCGTAATTGGTGATATCAGCGTTACTGAGATTAAAGCTCATACCCTAGTAAAAGCAATTCAA
CCGGTTCAGGCCAGAGGTGCATTAGAGACTGTACGTCGCCTTTGTCAGCGAATTAACGAGGTAATGATTTATGCACAAAA
TACGGGCCTAATTGATGCAGTTCCCAGTATAAATATCGGGAAAGCCTTCGAGAAGCCGCAGAAGAAAAATATGCCAAGCA
TCCGTCCAGACCAACTGCCGCAACTTATGCAGACTATGCGTACAGCCAATATTATCCTACCAACACGCTGCCTTTTCATG
TGGCAACTTCTTACTATCACCCGTCCTGCCGAAGCGGCGGAAGCTCGGTGGGATGAGATCAATTTTGATGCTAAAGAATG
GAAAATCCCAGCAGCTCGAATGAAAATGAACCGAGAACATACGGTTCCATTATCGGATGAAGCCCTTACCATTCTGGAAA
TGATGAAGCCTTTGAGTAGTAATAGAGAATTCATTTTTCCAAGCCGTATCAAACCAACACAATCAATGAATAGCCAAACA
GTGAATGCCGCACTCAAGCGTGCTGGTTTAGGAGGCATACTCGTTTCACACGGCTTGCGTTCTATCGCCAGTACAGCTCT
CAACGAACAAGGATTTTCACCTGATGTTATTGAAGCCGCGCTTGCTCATGTGGATAAAAATGAGGTACGTCGCGCTTATA
ACCGTAGTGATTATCTTGAGCAACGCCGCCCAATGATGCAATGGTGGGCCGATTTCGTAAACAAAGCAGATAGCGGGAGC
ATTATTACAAACGGGAAAAGAGAGTTAAAACTTGTAGTCTGA

Protein sequence : 
MARQTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKLRTKQSFGAYPAVSLSDARKLRAESRS
LLAKEIDPQEHQKEQVRNSHEAKTNTFLLVAERWWYLKKASVTEDYAQDIWRSLERDVFPVIGDISVTEIKAHTLVKAIQ
PVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSINIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTANIILPTRCLFM
WQLLTITRPAEAAEARWDEINFDAKEWKIPAARMKMNREHTVPLSDEALTILEMMKPLSSNREFIFPSRIKPTQSMNSQT
VNAALKRAGLGGILVSHGLRSIASTALNEQGFSPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVNKADSGS
IITNGKRELKLVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAA82714.1 integrase Not tested VPI Protein 5e-109 54
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 6e-109 54
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 6e-109 54
int AAK20773.1 integrase Not tested VPI Protein 5e-109 54
int AAK20803.1 integrase Not tested VPI Protein 5e-109 54
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 2e-108 51
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 3e-84 47
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 1e-84 47
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 3e-84 47
intA AAB00935.1 integrase A Not tested vap locus Protein 1e-49 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_1211 YP_001871643.1 integrase VFG1092 Protein 1e-84 47