Gene Information

Name : YPTS_1198 (YPTS_1198)
Accession : YP_001871630.1
Strain : Yersinia pseudotuberculosis PB1/+
Genome accession: NC_010634
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 1343831 - 1344301 bp
Length : 471 bp
Strand : -
Note : PFAM: DNA repair protein RadC; KEGG: ent:Ent638_0474 DNA repair protein RadC

DNA sequence : 
ATGTCTGTATTCAATTTATCCCCGGTATTTCCAGCAAACGAGCAACGCGTTATCCGTCGGGCATTGCGACTGCTGGAGAA
ATACCAGCGTCAACCGAGTGAGCCATTTATCTCCACCAGCGTCACGAAAACCAGGCTGCAATTACAGATGGCCCATCTGG
AACGTGAGGTCTTTGTCGTGATGTATCTCGATAACCAGCACTGCCTGCTGGAAAGCGAAATATTGTTTACCGGTACACTC
AGTCATACCGAAGTGCATCCACGTGAAGTGGTTAAATTAGCGCTGAAACACAATGCCGCTGCGGTCATTCTGGCGCATAA
CCATCCATCGGGTACGACGGAAATCAGCCAGCAGGACAAACATATCACTCAGCGAATTGTAAAAGCGTTGGCGCTGATGC
AAATACGCGTACTGGATCATCTGGTGGTCGGGAACGGAGTGGTTTCTTTTGCGGAGCAGGGTTTGCTTTAA

Protein sequence : 
MSVFNLSPVFPANEQRVIRRALRLLEKYQRQPSEPFISTSVTKTRLQLQMAHLEREVFVVMYLDNQHCLLESEILFTGTL
SHTEVHPREVVKLALKHNAAAVILAHNHPSGTTEISQQDKHITQRIVKALALMQIRVLDHLVVGNGVVSFAEQGLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 4e-33 56
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 2e-33 55
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 4e-33 55
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 1e-33 55
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 4e-33 55
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 2e-33 54
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 5e-34 54
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 2e-32 54
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 6e-33 54
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 5e-33 54
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 5e-34 54
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 4e-34 54
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 5e-34 54
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 2e-33 54
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 2e-33 54
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 2e-33 54
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 1e-33 54
unnamed AAL08475.1 unknown Not tested SRL Protein 3e-33 54
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 2e-33 54
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-26 54
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-26 54
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-26 54
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 5e-23 48
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 3e-22 42
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 5e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPTS_1198 YP_001871630.1 DNA repair protein RadC VFG0660 Protein 1e-33 55
YPTS_1198 YP_001871630.1 DNA repair protein RadC VFG1528 Protein 9e-34 54
YPTS_1198 YP_001871630.1 DNA repair protein RadC VFG1617 Protein 2e-33 54
YPTS_1198 YP_001871630.1 DNA repair protein RadC VFG1678 Protein 2e-34 54
YPTS_1198 YP_001871630.1 DNA repair protein RadC VFG1066 Protein 1e-33 54
YPTS_1198 YP_001871630.1 DNA repair protein RadC VFG1119 Protein 8e-27 54