|
Name : YPTS_1116 (YPTS_1116) Accession : YP_001871549.1 Strain : Yersinia pseudotuberculosis PB1/+ Genome accession: NC_010634 Putative virulence/resistance : Unknown Product : Hcp1 family type VI secretion system effector Function : - COG functional category : S : Function unknown COG ID : COG3157 EC number : - Position : 1254366 - 1254845 bp Length : 480 bp Strand : + Note : TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: ypi:YpsIP31758_2983 hypothetical protein DNA sequence : ATGTCTAATTTGATTTATGCAAGTGTTAATGGTAAAAAACAAGGTTTAATATCTGCCGGATGCTCGTCACTCAACTCTAT TGGTAATCGGTGCCAGGCAGGTCATGAAGATCAAATACAGGTATTAAGTTTAAATCATAGTATAAGCCGCCAACAGAATG TAGCTCATCACCCTGTTCATTTTGTTAAGCCTATAGATAAGTCATCTCCATTGCTAGGCGTGGCAATATCTGAAAATGAA CGAATAGATGTTGTCTTTTATTTTTATAGAGTAAATTCTGCTGGGCAGTTGGAACTTTATTATGAAGTTAAACTGACAGA TGCGAGTATTGTAGATATCACCAGTGTTTATCCACACTCAATAGATAATAATGAAATGATACCGTATGAAAAAATTCAAT TAAAATATAAATCCATAGCGTGGGATCACAAAAGTGCGGGTACTTCTGGTTACAGTGTATGGGAAGATAGGGTTTACTAG Protein sequence : MSNLIYASVNGKKQGLISAGCSSLNSIGNRCQAGHEDQIQVLSLNHSISRQQNVAHHPVHFVKPIDKSSPLLGVAISENE RIDVVFYFYRVNSAGQLELYYEVKLTDASIVDITSVYPHSIDNNEMIPYEKIQLKYKSIAWDHKSAGTSGYSVWEDRVY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf23 | AAO17189.1 | Orf23 | Not tested | tcd island | Protein | 1e-35 | 51 |
| aec32 | YP_851413.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 1e-34 | 50 |
| aec32 | AAQ96726.1 | Aec32 | Not tested | AGI-1 | Protein | 9e-35 | 50 |
