Gene Information

Name : Npun_R5987 (Npun_R5987)
Accession : YP_001869220.1
Strain : Nostoc punctiforme PCC 73102
Genome accession: NC_010628
Putative virulence/resistance : Virulence
Product : ATPase
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 7393362 - 7395830 bp
Length : 2469 bp
Strand : -
Note : PFAM: UvrB/UvrC protein; ATPase AAA, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA; SMART: AAA ATPase; KEGG: ana:alr2999 endopeptidase Clp ATP-binding chain

DNA sequence :
ATGTTTGAACGCTTCACAGAAAAAGCCATTAAGGTAATCATGCTGGCCCAAGAAGAGGCCCGCCGTTTAGGTCACAACTT
TGTCGGAACCGAGCAGATCCTCCTGGGTCTGATTGGCGAAGGCACTGGAGTGGCTGCCAAGGTGCTGAAATCAATGGGCG
TCAATCTCAAAGATGCCCGAATTGAAGTTGAAAAAATTATAGGACGGGGATCGGGCTTTGTTGCCGTGGAAATTCCGTTT
ACGCCACGGGCAAAGCGAGTTTTAGAACTCTCCTTGGAAGAAGCACGCCAACTGGGGCATAACTACATTGGCACCGAGCA
TCTGCTGTTGGGCCTAATCCGCGAAGGGGAAGGTGTCGCAGCCAGGGTGCTAGAAAACCTCGGTGTGGATCTATCTAAGG
TAAGAACTCAAGTCATCCGTATGTTGGGAGAAACTGCCGAAGTTTCACCAGGCGGCTCATCCGGGCGCACAAAAACCCCA
ACTCTGGATGAATTTGGCTCAAACCTGACCCAGATGGCGATAGACAATAAGCTCGATCCAGTGGTGGGACGCGCCAAGGA
AATTGAGCGGGTGATCCAGATATTGGGTCGCCGAACCAAAAATAACCCAGTGCTGATTGGGGAACCAGGGGTTGGTAAAA
CTGCGATCGCTGAAGGTTTAGCTTCACGCATTGCCACCAAAGATGTCCCTGACATCCTGGAAGATAAACGCGTCGTCACA
TTGGATATTGGTTTGCTCGTAGCAGGAACCAAGTACCGGGGTGAATTTGAAGAACGCTTGAAAAAAATCATGGATGAAAT
CCGCTCTGCGGGTAATGTCATTCTCGTGATTGATGAGGTACACACCTTAATCGGTGCGGGTGCAGCAGAAGGTGCGATTG
ACGCAGCAAATATCCTCAAGCCAGCTTTGGCTAGGGGTGAGTTGCAGTGCATCGGTGCTACAACCCTAGATGAATACCGG
AAGCACATCGAGCGAGATGCAGCTCTAGAGCGGCGTTTCCAACCAGTAATGGTTGGCGAACCTACAGTTGATGAAACAAT
TGAAATTTTATATGGTTTGCGCGAACGCTACGAGCAACACCACAAACTGAAAATCTCCGACGAAGCATTAGTAGCGGCGG
CGAAGTTATCAGATCGTTACATTAGCGATCGCTACCTCCCAGATAAAGCCATCGACTTAGTTGATGAAGCTGGTTCTAGA
GTGCGCTTGATTAACTCTCAGCTGCCACCCGCAGCCAAAGAGTTAGACAAAGAACTGCGTCAGATATTAAAAGAAAAAGA
TGATGCAGTGCGCTCTCAAGACTTTGACAAAGCTGGAGAATTGCGCGATCGCGAAATGGAAATCAAAGCCGAAATCCGAG
CGATCGCTCAAAGCAAGACCAATGCAACTGGCACAGAAGGTGAAGAACCTGTAGTTACAGAAGAAGACATTGCCCACATT
GTCGCTTCTTGGACTGGGGTACCGGTGAACAAACTCACCGAATCTGAATCTGAAAAGCTGCTGCACATGGAAGACACCTT
GCATCAGCGTTTAATCGGTCAGGACGAAGCTGTGAGAGCAGTTTCACGGGCAATTCGTCGCGCTCGTGTCGGTTTGAAAA
ATCCCAATCGACCCATAGCTAGCTTTGTCTTCTCTGGGCCTACTGGTGTAGGTAAAACCGAGTTGGCGAAGTCCTTAGCT
GCTTACTTCTTCGGTTCCGAAGAAGCGATGATCCGCTTAGATATGTCCGAATACATGGAGCGTCACACCGTCAGCAAGCT
GATTGGTTCCCCTCCAGGTTATGTTGGTTATAACGAAGGTGGTCAGCTGACCGAAGCCGTGCGGCGGCGACCTTACACTG
TGGTGTTGTTCGACGAAATCGAAAAAGCACACCCCGATGTATTCAACATGCTGCTGCAAATTTTGGAAGACGGTCGGTTA
ACTGATGCCAAAGGTCGCACGGTGGACTTCAAGAACACCTTGCTGATTTTAACTTCCAATATTGGTTCTAAGGTAATTGA
AAAAGGCGGTAGCGGTATCGGCTTTGAATTCTCCGAAGATGCCAGCGAGTCCACTTACAACCGGATTCGCTCTTTGGTCA
ACGAAGAACTCAAACAGTACTTCCGTCCAGAGTTCCTCAACCGACTCGATGAAATTATCGTTTTCCGTCAATTGAGCAAG
CCAGAAGTGACCCAAATCGCCGAAATTATGCTCAAGGAAGTATTTGGTCGCCTGACCGAAAAGGGTATCACCTTAGAAGT
CACAGACCGCTTCAAGGATCGGTTGATCCAAGAAGGTTACAGTCCCAGCTACGGCGCAAGGCCATTACGTCGGGCAATTA
TGCGCCTGTTAGAAGATAGCCTAGCAGAAGAAATTCTGTCTGGTCGTATCAAGGATGGCGATACAGCCCTTGTTGATGTG
GATGAAAATGGCGTTGTGCAAGTTAGTTCTCAACAGCGTCGGGAATTGTTACCCCAAGGCGTTGAGTAA

Protein sequence :
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF
TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVSPGGSSGRTKTP
TLDEFGSNLTQMAIDNKLDPVVGRAKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLASRIATKDVPDILEDKRVVT
LDIGLLVAGTKYRGEFEERLKKIMDEIRSAGNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR
KHIERDAALERRFQPVMVGEPTVDETIEILYGLRERYEQHHKLKISDEALVAAAKLSDRYISDRYLPDKAIDLVDEAGSR
VRLINSQLPPAAKELDKELRQILKEKDDAVRSQDFDKAGELRDREMEIKAEIRAIAQSKTNATGTEGEEPVVTEEDIAHI
VASWTGVPVNKLTESESEKLLHMEDTLHQRLIGQDEAVRAVSRAIRRARVGLKNPNRPIASFVFSGPTGVGKTELAKSLA
AYFFGSEEAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMLLQILEDGRL
TDAKGRTVDFKNTLLILTSNIGSKVIEKGGSGIGFEFSEDASESTYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQLSK
PEVTQIAEIMLKEVFGRLTEKGITLEVTDRFKDRLIQEGYSPSYGARPLRRAIMRLLEDSLAEEILSGRIKDGDTALVDV
DENGVVQVSSQQRRELLPQGVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Npun_R5987 YP_001869220.1 ATPase VFG0079 Protein 0.0 60
Npun_R5987 YP_001869220.1 ATPase VFG0080 Protein 2e-147 53