Gene Information

Name : Bphy_4953 (Bphy_4953)
Accession : YP_001861092.1
Strain :
Genome accession: NC_010623
Putative virulence/resistance : Unknown
Product : integrase catalytic region
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2038592 - 2039443 bp
Length : 852 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: pol:Bpro_5204 integrase, catalytic region

DNA sequence : 
TTGCGGATTGCCCCGTCGGGCTACCGACGCCATGCCGCGCAGCTTCGTGATCCGTCGCGGCGCTCTGTTCGCGCAATCCG
CGATGAACGTCTGCGGCCGGAGATCGAGCGCGTGTGGCGGGCCAACATGCAGGTCTACGGCGCCGATAAAGTCTGGAAGC
AGATGAACCGGGAGCGTATCGCGGTGGCGCGCTGCACGGTCGAACGGTTGATGAAGCAACTGGGTTTGCGCGGCGTGATG
CGAGGCAAGCGTGTTCGCACGACTGTTCCTGATGCCATAGCCCCGCGCCCACTGGATCGGGTCAATCGCCAGTTCAAGGC
GGCACGGCCGAACCAGCTCTGGGTTTCGGATTTCACCTACGTTTCGACGTGGCAGGGCTGGCTGTACGTAGCCTTCGTGA
TCGACGTGTTCGCTCGCCGTATTGTCGGCTGGCGCGTCAGCACCTCGATGACCACGGACTTCGTTCCGGATGCACTTGAA
CAGGCGCTTTACGCGCGACGCCCGGGCGACGACGGGACCTTGATACACCATTCGGACAGAGGGTCCCAATACGTCAGCAT
TCGCTATAGCGAACGGCTGGCCGAAGCGGGCATCGAACCGTCGGTCGGCAGCCGGGGCGACAGCTATGACAACGCCTTGG
CTGAAACGATCAACGGCTTGTACAAGGCTGAACTGATTCATCGCCGCACCTGGAAAACGCGGGAATCCGTTGAACTGGCA
ACGCTGGAGTGGGTGGCCTGGTTCAATCATCATCGATTGATGGAACCCCTCGGCTATATCCCGCCCGCCGAAGCTGAGGC
AAACTACTATCGGCAACTTGAAACAGCTGCCGCTGAACCCGTATTAACTTAA

Protein sequence : 
MRIAPSGYRRHAAQLRDPSRRSVRAIRDERLRPEIERVWRANMQVYGADKVWKQMNRERIAVARCTVERLMKQLGLRGVM
RGKRVRTTVPDAIAPRPLDRVNRQFKAARPNQLWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWRVSTSMTTDFVPDALE
QALYARRPGDDGTLIHHSDRGSQYVSIRYSERLAEAGIEPSVGSRGDSYDNALAETINGLYKAELIHRRTWKTRESVELA
TLEWVAWFNHHRLMEPLGYIPPAEAEANYYRQLETAAAEPVLT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 5e-64 66
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 5e-64 65
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 5e-60 65
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-70 64
Z1221 NP_286756.1 transposase Not tested TAI Protein 8e-77 64
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 8e-77 64
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 7e-77 63
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 5e-77 63
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 4e-74 63
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-76 63
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-76 63
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-76 62
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 2e-74 62
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 2e-74 62
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 9e-75 62
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 2e-74 62
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-76 62
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-76 62
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 5e-77 62
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-76 62
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 1e-73 61
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-51 61
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 3e-50 50
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 2e-33 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bphy_4953 YP_001861092.1 integrase catalytic region VFG1602 Protein 7e-74 61