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Name : hsdR (KRH_05260) Accession : YP_001854379.1 Strain : Kocuria rhizophila DC2201 Genome accession: NC_010617 Putative virulence/resistance : Unknown Product : type I restriction enzyme R protein Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 572075 - 575209 bp Length : 3135 bp Strand : + Note : - DNA sequence : ATGAACACCTTCAATGAGAACGTCGTTGAGCAGGCCGCTCTGGAGTACTTCGCCGAGCTGGGTTACCGACGTGTGCATGG CCCTGACATCGCGCCAGGAGAGCCTGGCGCTGAGCGGGAGTCGTACGAGGACGTCATGTTGTGGGGGCATGTGCGTGATG CGCTTCGGCGGATTAATCGTGGTGCGGACGCCGCGCTTGTCGCAGAGGCTGTGAAGACGGTTCAGCGTGCCGAGTCACAG AGCCCAATCGACGAGAACGCTCGCCTGCATAAGCTCATCACGGAGGGCGTACCGGTCGAGCATCGCGGCGACGATGGTCT GCTGCGCACAACGCGCTTGTGGCTCATGGACTTCGACGAGCCGGAGAACAACGACTGGGTGGCTGTCAGCCAGTTCACGA TCGTCGAGAACGGCAAGAATCGCCGCCCTGACGTGCTCGTCATGGTCAACGGGCTCCCGCTCTCGTTGTTGGAGCTGAAG AACCCGGCCGCTGAGCACGCGACGCTGAAGTCGGCGTGGAACCAGGTGCAGACCTACCGCCATGACATCCCGTCGGTGTT CGTGCCCAACGCTGTCACGGTGATCTCTGACGGCACATCTGCTGCGATGAGCAGTTACTCGGGTGCGTTCGAGCACTACG CGCCGTGGAAGACCATCGAGGGGCGTGAGGTTGTCAGCAACCGGCCAGCCCTTGAGGTTCTCATCAAGGGTGTGTTCGAG CCGAAGCGGTTCCTGGACCTGCTGAAGAACTTCGTCGTGTTCAGTGACGAGACAGTCACCGACAAGTCGACAGGACAGCC GACGCGGGCGCTCGTGAAGCGTGTGGCGAAGTACCACCAGTACTGGGCGGTCAACGCTGCCGTCGAGTCCACGGTGCAAG CGTCAAGCCCTGATGGGGACCGTCGCGGCGGTGTCGTGTGGCACACGCAGGGGTCGGGAAAGAGCTTCGAGATGGTGTTC TACGCCGCGAAGATCATGCGTGACCCGCGCATGGCGAACCCGACGCTGGTGTTCATCACTGACCGCAACGATCTCGACGA TCAGCTGTTCGGCGAGACTTTCGCCCCCGCGCGCATCCTGCCGGAGACGCCGGTGCAGGCAGCAACGCGCTCGGATCTGC GGGCCAAGCTGAAGCGCGCGTCGGGTGGGATCGTGTTCACCACCTTGCAGAAGTTCGCGCCGGGCGAGGACGGGGATACC AACCCCGTGCTCACTGACCGTCGGAACGTCATCGTTATCGCCGACGAGGCGCACAGGAGTCAGTACGGCTTCAGCGAGAC GCTCGACCGCCACGGCCGGCTCAAGTCTGGGCTGGCCAAGCACATGCGCGACGCGCTCCCTGGTGCCACGTACCTCGGTT TCACCGGCACTCCGATCGAGTCGAAAGACAAGTCCACCCGGGCTGTGTTCGGCGACTACGTCGACGTGTACGACCTCACA AGGGCAGTGGAGGATGGCGCGACTGTCCGGATCTTCTACGAGTCCAGGCTGGCAAAGATCGAGCTGTCGGAAGTTGACCA CGCAGCCCTCGACGAGCTCGCCGACGAGATCACCGAGTCCGTCGAGGAAGACACGGCAACAGCTGCGAAGTCACGTTGGT CGCGGCTGGAGGCGGTCGTCGGAGCGGAGGCACGACTTGACCTCGTAGCTCGCGACATCGTGGAGCACTGGGAGAAGCGC CGGGAGTCCCTGTTCGGCAAGGGCATGATCGTGACCATGAGTCGCCGGATCGCTGTACGGCTGTACGAGAAGATCGTCGC GCTGCGGCCCGATTGGCACTCGGATGACCCGGCGCAGGGCAAGATCAAGGTCGTCATGACCGGGTCCGCGTCTGATCCTG CTGAGTTCCAGCCGCACATCCACTCGAAGGACGTGCGCAAGGACCTCAAGCTGCGGGCGAAGAACGCGGACGACCCGCTG GAACTGGTCATCGTCCGTGACATGTGGCTGACCGGTTTCGATGCCCCGTCGATGCACACGATGTACGTCGACAAGACCAT GCAGGGCGCCGGGCTCATGCAGGCCATCGCTCGGGTCAACAGGACGTTCCGCGACAAGCCTGGCGGGCTGATCGTCGACT ACATCGGAGTGTTCGCGAACCTCCAGAACGCGTTGAGCGAGTACTCGCCGTCCGACCGCGAACAGGCTGGCGTGCCCATC GACGAGATGGTCCAGGTGATGTTGGAGAAGCATGACATCGTGCGCGGGCTGCTGCACGGCGTCCAATTCGATTCTTCCCC GGAGCTGACAGCCTCGCAGCGGTTGAACGAGTACGCGAAGGTCCTCGACTTCGTCATGGCGGACCCAGACCGGACTTCGC GATTTAATGACCAGGTGCTGGCTCTGGCGAAGGCGTTTGCGCTGGCGGGCGCGCGCGATGAGGCAGCCGCGATCCGGAAC AATGTCCGACTGTTCACGGACGTCAGGGCAGCGATCCTAAAGATCCAGAACCCTGACTCCGGCCGAGGCGGGTCAGGTGC CGTAGGGATCGATACAGCGCTCGGGCAGCTACTCAACGAGGCCGTTGCGGCCGATCAAGTCGTCGACGTCTATAAGCTCG CTGGCGTGGATACGCCAGACCTCTCAATCCTCAGCGACGAGTTCCTCAATTCGTTCGCGGAGAAGGACAAACCCAACCTC CAAATGGGTCTGCTGCATCGGTTGCTCAACGATCAAATTCGTACGGTGCAGCGCACCAACATTGTTCAAGCACGCAAGTT CTCCGAGCTACTGGATGAGGCGATTAACCGATACACGAACCGATCACTGACGACGGCAGAGATCATTGCGGAGCTGGTAA AACTCGCCAAGCAAATGCGCGACGATCAGAAGCGCCACGACGACCTCGGGCTTTCTAGCGCTGAGGTCGCGCTCTATGAT GCGATCGCGCAGAACGATTCCGCCGTGCTGGAAATGGGCGACGAAACGTTGAAGAAAATTGCTGTCGACGTGGTCTGGGC AGTCCGCAACAGCGTTGTCATCGACTGGGATCAAAAAGAGAGTGTCCGTGCCTCGATGCGATCCAGTGTGCGCCGCATCC TCGCAAAGTATGACTATCCTCCTGATGCTGAGGACGAGGCAGTCAACCTTGTACTGGAGCAAGCAGAGTTGTATGCCGAC AGCGCAACGAGGTAG Protein sequence : MNTFNENVVEQAALEYFAELGYRRVHGPDIAPGEPGAERESYEDVMLWGHVRDALRRINRGADAALVAEAVKTVQRAESQ SPIDENARLHKLITEGVPVEHRGDDGLLRTTRLWLMDFDEPENNDWVAVSQFTIVENGKNRRPDVLVMVNGLPLSLLELK NPAAEHATLKSAWNQVQTYRHDIPSVFVPNAVTVISDGTSAAMSSYSGAFEHYAPWKTIEGREVVSNRPALEVLIKGVFE PKRFLDLLKNFVVFSDETVTDKSTGQPTRALVKRVAKYHQYWAVNAAVESTVQASSPDGDRRGGVVWHTQGSGKSFEMVF YAAKIMRDPRMANPTLVFITDRNDLDDQLFGETFAPARILPETPVQAATRSDLRAKLKRASGGIVFTTLQKFAPGEDGDT NPVLTDRRNVIVIADEAHRSQYGFSETLDRHGRLKSGLAKHMRDALPGATYLGFTGTPIESKDKSTRAVFGDYVDVYDLT RAVEDGATVRIFYESRLAKIELSEVDHAALDELADEITESVEEDTATAAKSRWSRLEAVVGAEARLDLVARDIVEHWEKR RESLFGKGMIVTMSRRIAVRLYEKIVALRPDWHSDDPAQGKIKVVMTGSASDPAEFQPHIHSKDVRKDLKLRAKNADDPL ELVIVRDMWLTGFDAPSMHTMYVDKTMQGAGLMQAIARVNRTFRDKPGGLIVDYIGVFANLQNALSEYSPSDREQAGVPI DEMVQVMLEKHDIVRGLLHGVQFDSSPELTASQRLNEYAKVLDFVMADPDRTSRFNDQVLALAKAFALAGARDEAAAIRN NVRLFTDVRAAILKIQNPDSGRGGSGAVGIDTALGQLLNEAVAADQVVDVYKLAGVDTPDLSILSDEFLNSFAEKDKPNL QMGLLHRLLNDQIRTVQRTNIVQARKFSELLDEAINRYTNRSLTTAEIIAELVKLAKQMRDDQKRHDDLGLSSAEVALYD AIAQNDSAVLEMGDETLKKIAVDVVWAVRNSVVIDWDQKESVRASMRSSVRRILAKYDYPPDAEDEAVNLVLEQAELYAD SATR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 45 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 45 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 44 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 44 |
