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Name : hsdM (KRH_05230) Accession : YP_001854376.1 Strain : Kocuria rhizophila DC2201 Genome accession: NC_010617 Putative virulence/resistance : Unknown Product : type I restriction enzyme M protein Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : 2.1.1.- Position : 568589 - 570154 bp Length : 1566 bp Strand : + Note : - DNA sequence : ATGGCGAGACGGGCCGCGAAGACGAAGCCAGCGAAGACGCTGGAACAGACACTGTGGGATGCCGCTGACAAACTCAGGGG CAACCAGGAGCCCAGCGAGTACAAGCATGTCGTGCTGGGTCTGGTATTCCTCAAGTACGTCTCCGACCGGTTCGAGGAGC GCCGCGAGCAGCTCAAGGGCGAGCTGGCCGCCGAGGGCATCAAGCCCGAGCGGATCGAGTCGTTCTTGGAGGATCGCGAC GAGTACGCGAGCCAGAACGTTTTCTGGGTACCATCCCTCGCGCGATGGGGCTACGTGCAGTCGGTGGCGAAGCAGCCTGA GATCGGCCAGCAGATCGACCAGGCGATGGATCTCATCGAGAAGGAGAACCCCTCCCTGCGCGGCGTGCTCCCTCGCAACT ATGGCCGGGACGGTCTCGACAAGCGCCGTCTCGGTGAGCTGGTCGATCTCATCGGTTCGATCGGCTTCACTGAGACCGAC GATCACGGCGCAGACGATGTGCTCGGCCGCGTGTACGAGTATTTCCTGGGCCAGTTCGCGGGCAAAGAGACTGGCAAGGA CGCCGGAGCGTTCTACACGCCACGCTCCGTCGTCCGGACGCTCGTGGAGATGCTGGAGCCCTACAAGGGTCGCGTCTATG ACCCAGCAGCAGGCTCTGGCGGCATGTTCGTGCAGTCAGCGGAGTTCGTGAAGGCCCACGGCGGCAAGCGCACTGACATC TCTGTGTACGGGCAGGAGTTCACCGATACCACGTGGAAACTGGCGAAGATGAACCTGGCCTTGCGGGGCATCGAGGCTGA CATGGGCACGCACTCGGCTGATTCATTCACCGAGGATCTCCACCCAGACCTGCGCGCTGACTTCGTAATCGCGAACCCGC CGTTCAACGTGTCTGACTGGTGGGATGCGAAGCTCGCCGACGATCCCCGATGGAAATACGGAACACCACCGAAGGGCAAC GCGAACTTCGCATGGGTGCAACACTTCCTTCACCATCTTGCTCCCTACGGCACAGCAGGGTTCGTGCTCGCCAACGGGTC ACTGTCTTCCAAGAGCAGTGGCGAGGGCGAGACCCGTCAGCGGCTCGTCGAGGCGGGCCTGGTCGACTGCATCGTCGCGA TGCCCGACAAACTGTTCTTCAACACTGGCATCCCCGTGTCACTGTGGTTCGTTTCCAAGGGGCGTGACGGCAACGGGCAC CGCGCGCGCAAAGGGGAGGTGCTGTTTATTGACGCCCGCAAGCTCGGCCGGATGGAGTCACGCAAACTGCGCGTGCTCGA TAACGACGACATCGGGAAGATCGCGGGCACGTACCATGCGTGGCGCGACCACGACGGCGGTTACCAGAACGAGACTGGGT TCGCGAAGGCCGCGAAGATCGAAGAAATCGAGAAGCATGACTTCGTCCTGACCCCTGGCCGCTACGTAGGTGCGGCGGAG GCGGAGGTTGACGACGAGCCGATCGACGAGAAAATCGAGCGCCTCACGACCGAGCTATTTGCAGAATTCGAGCGCGGACG TGAGCTTGAAGATGAGGTTCGTGCTCGACTGAGAGGTGTGCTTTGA Protein sequence : MARRAAKTKPAKTLEQTLWDAADKLRGNQEPSEYKHVVLGLVFLKYVSDRFEERREQLKGELAAEGIKPERIESFLEDRD EYASQNVFWVPSLARWGYVQSVAKQPEIGQQIDQAMDLIEKENPSLRGVLPRNYGRDGLDKRRLGELVDLIGSIGFTETD DHGADDVLGRVYEYFLGQFAGKETGKDAGAFYTPRSVVRTLVEMLEPYKGRVYDPAAGSGGMFVQSAEFVKAHGGKRTDI SVYGQEFTDTTWKLAKMNLALRGIEADMGTHSADSFTEDLHPDLRADFVIANPPFNVSDWWDAKLADDPRWKYGTPPKGN ANFAWVQHFLHHLAPYGTAGFVLANGSLSSKSSGEGETRQRLVEAGLVDCIVAMPDKLFFNTGIPVSLWFVSKGRDGNGH RARKGEVLFIDARKLGRMESRKLRVLDNDDIGKIAGTYHAWRDHDGGYQNETGFAKAAKIEEIEKHDFVLTPGRYVGAAE AEVDDEPIDEKIERLTTELFAEFERGRELEDEVRARLRGVL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 1e-141 | 55 |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 4e-141 | 54 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 2e-139 | 54 |
| api49 | CAF28523.1 | putative HsdM-like N-methyl transferase | Not tested | YAPI | Protein | 2e-119 | 50 |
