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Name : lysS (KRH_21510) Accession : YP_001856004.1 Strain : Kocuria rhizophila DC2201 Genome accession: NC_010617 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2474640 - 2477939 bp Length : 3300 bp Strand : + Note : catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGGACAAGACCCACGACCGCCTGCCACGGCTGGCCAGCGCCCTGGTGTTCCTGGCCTCCCTGTGGTCCCTCGTCTCCAT CCCGTTCCCCCGCGGTGAGGCCCTCTACCTGGTGGACGACGCGTTCACCGCGCTCGGCGTCCCGGCCGGGCCCAACCTGT TCCTCGCGCTGAGCCTGTTCATCGTGGGCGCCGCGCTGCGCCGCAGGCTGCGGATCGCGTGGTTCGTGTCCTTGGCCGTG CTGGCGGTGGAGATGCTCGTGTACGTGCTCACGGGCGTCGTGCTGGTCTCGGACTCGCTGGAGGGTGAGCTGGACGCCCT GGACTGGGTGCTGCTCAGCGTGGGCTGCGTGGTCACGCTCGCGTGGATCGTGGCGTTCGTCGTGCGCCGCCGCGACTTCC CCGCACGGATGCGCCACGGCGCCACCCGCCAGGCCCTGCTCACCCTCGTGGCGGGCCTGGCCCTGGTGATCGTCCTGGTC TCCACCGTCTCCTGGTTCATCCCCAGCCACCTGCACGGCATCGAGCACCTGTGGTTCTCCTTCCGCAGCGTCACGGGGCT GTCCCTGCCGCGCAGCATCTCCGACGGCTCGGCGGGACCGCACTGGCTCGCGACGCTGGGCGGCGTGCTGGGTGCCGCCG TGCTGTTCTACGCGGTGTGGAGCTTCACGCAGTCCGCGCAGCGCTCCGAGGTGATGGGCCCGGAGGACGAGCTGCACGTG CGCCGGCTGCTCGCCACGAACGGCAACCAGGACTCCCTGGGGTACTTCGCCACCCGTCGGGACAAGTCCGTGATCTTCTC CGCGGACGGGCGTGCCGCCGTGTCCTACCGCGTGATCGGCTCCGTGTGCCTGGCCTCCGGGGACCCCCTGGGCCACCCGG ACGCGTGGCAGGACGCCATTGCCGCGTGGCAGCGCGAGGGCCGCGTGCACGCGTGGCGCATGGGCGTGCTCTCCGCCTCG GAGACCGGCGCCCGCGCGTACATCAAGGCCGGCCTGAAGGCCCGCCCGCTCGGGGACGAGGCCGTGCTCGACACCGAGTC CTTCACCCTGGAGGGCCGGGCCATGCGCCCGGTCAAGCGCGCGGTCGCCCGCGTGTGCGAGGCCGGTTGCACCGTCACCG CCGAGCGCCACAGCCAGCTGGACGCCGCCACGATGCAGCAGATCATCGACCTCTCCGAGCAGTGGCGCGGGGACGAGGCG GACCGCGGCTTCTCCATGGCCCTTAACCGCCTCGCGGACCGCACGGACGGGCGAAGCGTGGCGGTGCTCGTGCGGGACGC CTCCGGGCAGATCGTGGCCCTGCAGTCCTACGTGCCGTGGGGCACCCGCGGCCTGTCCCTGGACCTGATGCGCCGCTCGC CGCAGGCCCCCAACGGCGTCAACGAGGCCATGGTGGCCACCCTCGCCGAGGAGGGCGGGGATCTTGGCGTGCGGGAGATC TCCCTGAACTTCGCGATGTTCCGCTCCGTGTTCACCGGCGCGGACAAGGTGGGCGCGGGCATCGGCGTGCGCCTCGCGGA CCGCGTGCTCACGTGGGGCAACCGCTTCTGGCAGCTCGAGTCGCTCTACGAGGCCAACGCCAAGTACCTGCCCCGCTGGG ATGCGCGCTTCGTCTGCTACGACTCCACTGCCAACCTGCCCTACATCGGCATCGCCGCGGGCCGCGCCGAGGGCTTCCTC CCGGGCCGTCCGCCGCGCCCCGGTCACGACGGCGAGGCCCTGCTGGCCGGGCCCGACGGCGCTCCCACCCCCCTCGCGGA CCTCGCCATCGCGCAGGACCGCGAGCTGCTCACCCCGCCCCGCCCGGTGCGCCACCTCACCGAGCAGCAGCGGGTCCGCC ACGCCAAGCTGGATGTGCTGCGCGAGGCCGGGATGGAGCCCTACCCCGTGGGTGTGCCCTACACGATGTCCCTGGAACGG GCACGGCAGATCATCGAGGAGGGCGCGGAGGCCACTGTCGCCGAGCCCGTCTCGCTGGGAGGGCGCGTGCGCGAGCTGCG TGACTTCGGCGGCGTCGTCTTCGCCGTGATCGAGGAGCACGACGTGCGGCTGCAGGTGATCCTGGAGGACTCCGCCGTGA GCCCCGAGCTGCTGAGCCTGTGGCGGCGCGCGGTGGACGTGGGGGACCACATCTCCGCGACCGGCACGCTTGGCCGCAGC CGCCGCGGGGAGCCCTCCCTGCTGGCGACCTCCTGGGCCATGGCCTCCAAGTCCCTGCGCCCCGTGCCGAGCGACCACAC CGGGTTCACCAACCCGGAGGCGCGCGTGCGCCAGCGCTACCTGGACCTGATCGTGAACAAGGACTCCGCACGGCTGCTGC GCGCCCGCTCGCGCGGCATCGCGGCCATGCGGCAGTCCTTCATGGAGCGCGGCTACATGGAGGTGGAGACCCCCATGCTG CAGGCCGTGCACGGCGGAGCAAGCGCCCGCCCGTTCCGCACCCACATCAACGCCTACAACGCGGACCTCTACCTGCGCAT CGCCCCGGAGCTGTACCTCAAGCACCTGTGCGTGGGTGGCATGGACAAGATCTTCGAGCTCAACCGCAACTTCCGCAACG AGGGCGCGGACGCCACCCACAACCCCGAGTTCACCTCCGTGGAGGCGTACGCGGCGCACGGCGACTACAACACCATGCGG GTGCTCACCCGGGACCTCATCATCGAGGTGGCCACCGCGATCCACGGCGAGCCCGTGGCCGTGCGCCCGGACGGCAACGG CGGGGAGACCCGCATCCGGCTGGACCACGAGTGGCCCGTGATCCCCGTACACCAGGCGGTCTCCGAGGCCACCGGCACCC TGCTGACCTCGCACACCCCGCTGGAGGAGGTGCGGGCGGTGGCCTCAGCGCACAGCGTGCACTGGAGCGAGGAGATGACC GCCGGTGAAGTGGTCCTGGAGCTCTACGACGAGCTCGTGGAGGGCCAGACCACCCTGCCGGTGTTCTACACGGACTTCCC GCTGGAGACCTCCCCGCTGACGCGCACGCACCGCACGGACCCGAAGCTCTCGGAGCGCTGGGACCTGGTGGCGTTCGGCG CGGAGATCGGCACCGCGTACTCGGAGCTCGTGGACCCCGTGGACCAGCGCAACCGCCTGACGGAGCAGTCCTACAAGGCC GCCGCCGGCGATCCGGAGGCCATGGAGGTGGACGAGAACTTCCTCACCGCCCTGGAGTACGCCATGCCTCCCACGGGTGG CCTGGGCATCGGCGTGGACCGGATGATCATGATGCTCACGGGCACCAACATCCGCGCCACCCTGGCGTTCCCGTTCACCC GCCCCAACGAGCAGCGCTGA Protein sequence : MDKTHDRLPRLASALVFLASLWSLVSIPFPRGEALYLVDDAFTALGVPAGPNLFLALSLFIVGAALRRRLRIAWFVSLAV LAVEMLVYVLTGVVLVSDSLEGELDALDWVLLSVGCVVTLAWIVAFVVRRRDFPARMRHGATRQALLTLVAGLALVIVLV STVSWFIPSHLHGIEHLWFSFRSVTGLSLPRSISDGSAGPHWLATLGGVLGAAVLFYAVWSFTQSAQRSEVMGPEDELHV RRLLATNGNQDSLGYFATRRDKSVIFSADGRAAVSYRVIGSVCLASGDPLGHPDAWQDAIAAWQREGRVHAWRMGVLSAS ETGARAYIKAGLKARPLGDEAVLDTESFTLEGRAMRPVKRAVARVCEAGCTVTAERHSQLDAATMQQIIDLSEQWRGDEA DRGFSMALNRLADRTDGRSVAVLVRDASGQIVALQSYVPWGTRGLSLDLMRRSPQAPNGVNEAMVATLAEEGGDLGVREI SLNFAMFRSVFTGADKVGAGIGVRLADRVLTWGNRFWQLESLYEANAKYLPRWDARFVCYDSTANLPYIGIAAGRAEGFL PGRPPRPGHDGEALLAGPDGAPTPLADLAIAQDRELLTPPRPVRHLTEQQRVRHAKLDVLREAGMEPYPVGVPYTMSLER ARQIIEEGAEATVAEPVSLGGRVRELRDFGGVVFAVIEEHDVRLQVILEDSAVSPELLSLWRRAVDVGDHISATGTLGRS RRGEPSLLATSWAMASKSLRPVPSDHTGFTNPEARVRQRYLDLIVNKDSARLLRARSRGIAAMRQSFMERGYMEVETPML QAVHGGASARPFRTHINAYNADLYLRIAPELYLKHLCVGGMDKIFELNRNFRNEGADATHNPEFTSVEAYAAHGDYNTMR VLTRDLIIEVATAIHGEPVAVRPDGNGGETRIRLDHEWPVIPVHQAVSEATGTLLTSHTPLEEVRAVASAHSVHWSEEMT AGEVVLELYDELVEGQTTLPVFYTDFPLETSPLTRTHRTDPKLSERWDLVAFGAEIGTAYSELVDPVDQRNRLTEQSYKA AAGDPEAMEVDENFLTALEYAMPPTGGLGIGVDRMIMMLTGTNIRATLAFPFTRPNEQR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 3e-180 | 46 |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 0.0 | 46 |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 0.0 | 46 |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 0.0 | 46 |
