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Name : lysS (MMAR_5102) Accession : YP_001853361.1 Strain : Mycobacterium marinum M Genome accession: NC_010612 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 6181958 - 6183454 bp Length : 1497 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : GTGAGCTCCGCCGAGTCAGACATTCCCGAGCAGTTCCGAATCCGTCGGGACAAGCGTGCTCGGTTATTGGCAGAGGGGTA TGACCCCTATCCGGTAGCCATCGAACGCACTCACACGTTGGCCGAGATTCGTGCCACCTATGCCGACCTACCGACAGATT CGGCGACCGAGGACATCGTCGGTGTCGCGGGTCGAGTGGTGTTCGCGCGTAACACCGGGAAACTGTGTTTTGCGACACTG CAGGACGGCGACGGCACCCAGCTGCAGGCGATGATCAGCCTCGACAAGGTGGGCCGCGAATCGCTGGACAGGTGGAAGGC CGACGTCGACATCGGTGACGTCGTCTACGTGCACGGCACCGTGATCAGCTCCCGTCGGGGCGAACTATCGGTGCTCGCCG ATTCCTGGCGGATGGCTGCCAAGGCCTTGCGGCCGCTGCCGGTCGCACACAAGGAGATGAGCGAGGAGTCGCGGGTTCGT CAGCGCTACGTCGATTTGATCGTGCGTCCGCAGGCGCGGGAGGTCGCGCGACAGCGGATTGCGGTAATCCGTGCGGTGCG TAATGCGCTGGAGCGGCGCGGGTTTCTCGAAGTCGAAACGCCAATGTTGCAGACCTTGGCCGGCGGCGCTGCGGCGCGGC CGTTCGTCACCCATTCCAATGCCCTTGACATCGATCTTTACCTGCGTATCGCGCCGGAACTGTTCCTCAAGCGTTGCATC GTGGGCGGTTTCGACAGGGTCTTTGAACTAAATCGGGTGTTCCGAAACGAAGGGTCTGATTCCACCCATTCCCCGGAATT CTCCATGCTGGAGACGTATCAGACCTATGGAACCTATGACGATTCGGCCCTGATCACCAGAGAGCTTATTCAAGAAGTTG CTGACGAGGCGATCGGAACCAGACAACTCCCGATGCCTGACGGCAGCGTGTACGACATCGACGGAGAATGGGCGACTATC GAGATGTATTCCTCCTTGTCGGAGGCACTGGGGGAACAGATCACGCCAGAGACGACGGTTGCTCGCTTACGTGACATCGC AAGCGGACTTGACGTAGAGATTGACAACAGTGTTTTTGGTCACGGCAAACTTGTCGAGGAACTCTGGGAACATGCTGTCG GCAACAAGTTGACGGCGCCCACATTTGTCAAGGATTTCCCAGTCGAGACAACGCCATTGACTCGTCAGCACCGCAGTATC CCCGGAGTAACCGAGAAGTGGGATCTCTACGTGCGCGGAGTCGAACTGGCTACCGGGTACTCGGAATTAAACGATCCCGT CGTCCAGCGGGACAGATTCGCTGATCAGGCCCGTGCGGCGGCCGCGGGTGACGACGAGGCGATGCAACTTGACGAAGATT TTCTGACGGCTCTGGAGTACGGGATGCCCCCGTGTACTGGAACTGGAATGGGCATCGATCGGTTGTTGATGTGTTTGACC GGACTGTCAATTAGGGAGACAGTTTTGTTCCCGATTGTTCGCCCTCACTCCAACTGA Protein sequence : MSSAESDIPEQFRIRRDKRARLLAEGYDPYPVAIERTHTLAEIRATYADLPTDSATEDIVGVAGRVVFARNTGKLCFATL QDGDGTQLQAMISLDKVGRESLDRWKADVDIGDVVYVHGTVISSRRGELSVLADSWRMAAKALRPLPVAHKEMSEESRVR QRYVDLIVRPQAREVARQRIAVIRAVRNALERRGFLEVETPMLQTLAGGAAARPFVTHSNALDIDLYLRIAPELFLKRCI VGGFDRVFELNRVFRNEGSDSTHSPEFSMLETYQTYGTYDDSALITRELIQEVADEAIGTRQLPMPDGSVYDIDGEWATI EMYSSLSEALGEQITPETTVARLRDIASGLDVEIDNSVFGHGKLVEELWEHAVGNKLTAPTFVKDFPVETTPLTRQHRSI PGVTEKWDLYVRGVELATGYSELNDPVVQRDRFADQARAAAAGDDEAMQLDEDFLTALEYGMPPCTGTGMGIDRLLMCLT GLSIRETVLFPIVRPHSN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 1e-143 | 62 |
