Gene Information

Name : MMAR_2548 (MMAR_2548)
Accession : YP_001850850.1
Strain : Mycobacterium marinum M
Genome accession: NC_010612
Putative virulence/resistance : Unknown
Product : transposase, ISMyma03_aa2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 3099144 - 3100007 bp
Length : 864 bp
Strand : +
Note : transposition of ISMyma03

DNA sequence :
GTGCTCACTGAGCATGGCATCAAGATCAGCCCTTCCACCTACTACGAGTGGATGAAAAGAACACCGAGCAAGCAGCAGCT
TCGCGATGAAGCGGTGACCGCCTCGATCAAGGAATTCCGCGAACGCAACCCGTTGAACAAGACCCTGGGCAGCCGCAAGG
TATGGATCAAGCTGCGTGGGGACGGCATGGACGTTGCGCGATGCACCGTTGAGCGTCTGATGCAGGCCAACCGCTGGCAG
GGTGCCCGTTACGGTGGCGCGCCCAAAACGACCATCCAGGACGAGAAGGCCCAGCGGGCAACGGATCTCGTCGACCGCGT
CTTCGCCGCGCCGGCCCCCAACCGGTTGTGGGTGGCCGATTTCACGTATTGCCCGACATGGGCGGGGATGGTGTACGTAG
CGTTCGTGATTGACGCGTTCGCCCGCCGGGTCATCGGCTGGCGCGCAGCCACGTCCATGAAGACCGCGTTGGTTATAGAT
GCGCTCGAGCATGCGTTCTTCACCCGCGCACAGGAGGGCTTCACTGATCTGTCCGGGCTGGTGGCGCACAGCGACGCCGG
GTCGCAATACACGTCTATCGCGTTCACCACGCGGCTGATCGATGCTGGTATCGACGCCTCGGTCGGATCCGTGGCCGACG
CGTATGACAACGCCCTCGCCGAGACCACCGTGGGGTCATTCAAGAACGAGCTGATCCGCCGGCAGGGGCCATGGCGCGAT
GTCGACCACGTCGAGATCGGCACCCTGAACTGGGTTGACTGGTTCAACAATGAACGGCCCCACGAGTACCTCGCCGACCT
CACCCCGACACAGGCGGAGGCATTGCACTACCGTCACAAGAGTTCCCTGGCAGCAGCCGGGTGA

Protein sequence :
MLTEHGIKISPSTYYEWMKRTPSKQQLRDEAVTASIKEFRERNPLNKTLGSRKVWIKLRGDGMDVARCTVERLMQANRWQ
GARYGGAPKTTIQDEKAQRATDLVDRVFAAPAPNRLWVADFTYCPTWAGMVYVAFVIDAFARRVIGWRAATSMKTALVID
ALEHAFFTRAQEGFTDLSGLVAHSDAGSQYTSIAFTTRLIDAGIDASVGSVADAYDNALAETTVGSFKNELIRRQGPWRD
VDHVEIGTLNWVDWFNNERPHEYLADLTPTQAEALHYRHKSSLAAAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 3e-40 50
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 5e-44 50
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 7e-40 49
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 3e-45 47
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-29 47
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-44 46
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 3e-43 45
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 3e-44 45
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 6e-43 45
Z1221 NP_286756.1 transposase Not tested TAI Protein 3e-44 45
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 6e-43 45
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-44 45
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 6e-43 45
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-44 45
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-44 45
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-44 45
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-44 45
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 8e-42 45
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 2e-43 44
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 5e-42 44
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 2e-43 44
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 4e-41 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MMAR_2548 YP_001850850.1 transposase, ISMyma03_aa2 VFG1602 Protein 2e-41 43