Gene Information

Name : LAF_0946 (LAF_0946)
Accession : YP_001843762.1
Strain : Lactobacillus fermentum IFO 3956
Genome accession: NC_010610
Putative virulence/resistance : Resistance
Product : glycine/betaine ABC transporter ATP-binding protein
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG1125
EC number : -
Position : 1101240 - 1102007 bp
Length : 768 bp
Strand : -
Note : -

DNA sequence : 
ATGAACCAACCCGAAATTGAATTTGAACACGTCGTTAAGCGCTTTGGTCAAACAACGGTCATCCCGGACCTGTCCTTTAC
CATTAACAAGGGGGAGTTCGTGACCGTGCTGGGGTCATCTGGCTCGGGGAAGACGACGACCCTCAAAATGATCAACGGTC
TTTGGCAACCGACCAGCGGCACGGTTAAGATCGGTGGTAAAGAATTAACGGAGCACAACCAAGTGGACCTGCGGCGCCAC
GTCGGCTACGTGGTCCAACAGATTGCCCTCTTTCCCCACCTGACAATCAAGCAAAACATCGCCGTTGTTCCTAAGCTGTT
GGGGTGGGAGCAAGCTAAAATTGACCAGCGAGTTGACGAACTATTGGACCTAGTCAAACTTCCCAGCGACCAGTACGCTG
ATCGCTACCCCGCCCAGTTATCCGGGGGGCAGCAGCAACGCGTCGGCCTCGCCCGCGCCCTGGCCGCCAACCCCGATTTC
ATCCTCTTTGACGAACCGCTCGGCGCCCTAGATGCCTTAACCCGGATTGATTTGCAAAAGGAAATCAAAAACCTCCACGC
TTCGCTTGCCGATAAGACCTTTTTCTTTGTTACCCACGACATTAACGAGGCGCTTTATTTGGGGCAGCGGGTCATGGTGA
TGAACAGGGGACGCCTCGAACAGTTTGCCAGCCCGGAAACGATCGTCCAACACCCGGCGAGCCCCTTTGTTGAAGAGCTA
CTGGCAACCGAGGAGCGTAACCAGGAACTCTGGAGGCGACTGCAATGA

Protein sequence : 
MNQPEIEFEHVVKRFGQTTVIPDLSFTINKGEFVTVLGSSGSGKTTTLKMINGLWQPTSGTVKIGGKELTEHNQVDLRRH
VGYVVQQIALFPHLTIKQNIAVVPKLLGWEQAKIDQRVDELLDLVKLPSDQYADRYPAQLSGGQQQRVGLARALAANPDF
ILFDEPLGALDALTRIDLQKEIKNLHASLADKTFFFVTHDINEALYLGQRVMVMNRGRLEQFASPETIVQHPASPFVEEL
LATEERNQELWRRLQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 6e-49 47
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 2e-49 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LAF_0946 YP_001843762.1 glycine/betaine ABC transporter ATP-binding protein BAC0600 Protein 1e-24 41