Gene Information

Name : LAF_0088 (LAF_0088)
Accession : YP_001842904.1
Strain : Lactobacillus fermentum IFO 3956
Genome accession: NC_010610
Putative virulence/resistance : Virulence
Product : capsular polysaccharide synthesis protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 112240 - 112791 bp
Length : 552 bp
Strand : +
Note : -

DNA sequence : 
GTGCTCTTATTAATCTGTCTTTTGCCGCTCATGTTGGTGTTGGCAATTTGGATTAAGCTAGACTCAAAGGGACCAGTGCT
GTTTAAGCAGGAACGGGTCGGCCGCAATGGGAAACGGTTTACGATTTATAAGTTCCGTTCCATGAGTGATGATGCACCCC
ACCAAATGGCAACATCGGAATTTGACACCGCACTGGGCTACATCACGCGGAGCGGTCAGTTAATGCGAAAAACCAGTTTG
GATGAATTGCCGCAGTTGGTGAACGTGGTGAAGGGTGAAATGTCCTTTATTGGACCACGACCGCTGATTCCAAAGGAAAA
AAATGTCTTGCGGCTTCGCCACGCCAATGGAGCTGAAAGTTTGGCACCCGGAATAACGGGCTTGGCTCAGGTTCGGGGCC
GCGATGAAGTAACGGATACCCAAAAAGCTAATTATGACGGTGAATATGCCAGCAATGTAACCTTGCGGGGAGATCTTTTA
ATTTTAGTTGAAACTGTGTTAGCTGTTTTGGCAAGACGCGGTGTGCATGATGGAAAAGTAAATAATAAGTGA

Protein sequence : 
MLLLICLLPLMLVLAIWIKLDSKGPVLFKQERVGRNGKRFTIYKFRSMSDDAPHQMATSEFDTALGYITRSGQLMRKTSL
DELPQLVNVVKGEMSFIGPRPLIPKEKNVLRLRHANGAESLAPGITGLAQVRGRDEVTDTQKANYDGEYASNVTLRGDLL
ILVETVLAVLARRGVHDGKVNNK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 5e-32 48
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 6e-30 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LAF_0088 YP_001842904.1 capsular polysaccharide synthesis protein VFG1369 Protein 4e-26 45
LAF_0088 YP_001842904.1 capsular polysaccharide synthesis protein VFG1309 Protein 7e-31 44