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Name : LAF_0066 (LAF_0066) Accession : YP_001842882.1 Strain : Lactobacillus fermentum IFO 3956 Genome accession: NC_010610 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 85598 - 86896 bp Length : 1299 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGTTAGACATCAAGCAAATTCGCCAACAACCGGACTGGTTCAAAGAAAAGCTGGCCACCCGGGGCGTTCAACCAGAAGA AATCGACACCGTGCTAGAACTGGACGCCAAGCGGCGCGAACTCCTGCAACAAACCGAAACCCTGAAGGCCAAGCGTAACG AAGCCTCCAAGAAGATCGGGGAAGCTAAGCGGGCCAAGCAATCCGCTGACGAAGCAATTGCCGAGATGCGCCAAGTCGGC GAAGACATCAAGGCCTTAGACGAACAGGTGGAAGCAAACGACAAGGACCTCTTTGACAAGTTAGCCCACCTGCCGAACGT CCCTCACGAAGGGGTGCCGGTTAGCCTGACCGAAGATGGGGCCGAAGAACTGCGTAAGGTAGGTCAAGCCCGTCAATTCG ACTTTGAACCAAAGCACCACTGGGAAATCGGCGAAAACCTCGGGATTTTGGACTTTGAACGGGCCGGTAAGGTTTCTGGC TCCCGCTTCGTCTACTACGTCGGCCTCGGGGCTCAATTAGAACGGGCGCTGTACAACTTCATGCTCGATGAACACATGAA GGAAGGCTACACCGAAGTCTTGCCGCCGTACATCGTCAACGCTCACGCGATGTACGGGACCGGTCAATTCCCGAAGTTCA AGCAGGACGTTTACCAAGTGAACGGCGAAGACATGACCCTGATCCCGACCGCCGAAGTTCCGTTGACCAACTACTTTGCC GGCGAAGTGATCCCCGCAGAAAAGCTGCCGGTTTACGTGACGGCCTTGACGCCTAGCTTCCGTTCCGAAGCTGGGTCAGC TGGTCGCGATACCCGCGGGTTGATCCGGATGCACCAATTCAACAAGGTCGAAATGGTTAAGTACACCAAGCAAGATCAAT CCTGGGAAGAACTCGACAAGATGACGGCCAACGCCGAAAACATCCTCCAAAAGCTCGGCCTGCCGTACCACGTCATCACC CTGACAACTTCGGACATGAGCTTCACGGCCTCCGAAACCCACGACCTGGAACTGTGGATGCCGGCCCAAAACAAGTACCG GGAAGTTTCCTCTTGCTCCAACTGCTTGGACTTCCAAGCCCGGCGCCTGCACATGCAATACCGGGACGAAAACGGTAAGC TCCAATACGTGCACACCCTGAACGGTTCTGGTTTAGCCGTTGGGCGGACGTTGGCGGCCATCTTAGAAAACTACCAAAAC GAAGACGGCTCCGTGACGATTCCAGAAGTCTTGGTACCGTACTTCCACGGCATCACCAAGATCACCAAGGAAAACGCCGT GCCGTTTAACAACAAGTAA Protein sequence : MLDIKQIRQQPDWFKEKLATRGVQPEEIDTVLELDAKRRELLQQTETLKAKRNEASKKIGEAKRAKQSADEAIAEMRQVG EDIKALDEQVEANDKDLFDKLAHLPNVPHEGVPVSLTEDGAEELRKVGQARQFDFEPKHHWEIGENLGILDFERAGKVSG SRFVYYVGLGAQLERALYNFMLDEHMKEGYTEVLPPYIVNAHAMYGTGQFPKFKQDVYQVNGEDMTLIPTAEVPLTNYFA GEVIPAEKLPVYVTALTPSFRSEAGSAGRDTRGLIRMHQFNKVEMVKYTKQDQSWEELDKMTANAENILQKLGLPYHVIT LTTSDMSFTASETHDLELWMPAQNKYREVSSCSNCLDFQARRLHMQYRDENGKLQYVHTLNGSGLAVGRTLAAILENYQN EDGSVTIPEVLVPYFHGITKITKENAVPFNNK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-129 | 62 |
