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Name : LAF_0056 (LAF_0056) Accession : YP_001842872.1 Strain : Lactobacillus fermentum IFO 3956 Genome accession: NC_010610 Putative virulence/resistance : Unknown Product : succinyl-diaminopimelate desuccinylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0624 EC number : - Position : 70482 - 71630 bp Length : 1149 bp Strand : + Note : dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is simi DNA sequence : ATGGATCAAACCGAACGGACCCGGGTGCTTAGCGACCTGGTCAAAATTAATAGTGTCAACGGCAATGAACTAGAAGTGGC CAATTACTTGCGCCGCCTGTTTGAACAGCACGGGTTGACGGCCGACGTCCAGCCCTTCGGCGAGCAGCGGGCCAACCTGA TTGTAGAGGTGGGCGCCGGTAAACCAATCCTGGGGATCACCGGCCACATGGACACGGTCGCCCTGGGCGATGAAAAGAAG TGGCACCACGCCCCCCTGAGCGCCACGATTGAAGGGGACCGCCTGTACGGACGAGGGGCCGCCGACATGAAGTCGGGCCT GGCCGCCCAGGTGATTGCCCTGATTGAATTGGTTGAATCAGGAACCCTGACTGGTCACGTCCGCTTCATCGCTACGGCCG GTGAGGAGTACGGGACCCCGGGTGCTAACCGCCTGGAAGAAGCGGGGGTGGCTAAGGACCTGAACGCCCTGGTGGTCGGG GAGCCCACCAGCGGGAACGTCATCTACGCCCACTCGGGAAGCTACAACTACCGGATCGTTTCAACTGGCCAGGCGGTGCA CTCTTCGGAACCGGAACGCGGCCAAAATGCCCTGGAGCCCCTGGTCGACTTTGCCCTGGCCGAACGCGACCTCTTCTTTG ACGTTCCGGATGACCCCTGCCTGGGGCCGCTCAAGCACTCGGTGACGATTATTCAAGGGGGCGAGCAGGTCAACACGATC CCGGACTACGCGGAACTGCGGGGGAACATCCGCCCCACGATGCGCTTTGATAACGACCACGTCACCGCCCGTTTGCAGGC CGCCGTGGACCGGCTTAACCAGGAGGGTGCTGCCCATTTAACCCTGGAAGTGCTCCACTCCTGGCGCCCGGTGGCCTCCA ATCCCAACGGTGACTTTGTCAAGCGGGCCCTACAAGCTAGCCAGGAGGCCTTTGCAAAGTACCCGGGGCACGCGACCCCA GAACTCGGGGTCATCCACGGGGCGACCGACGCTTCGGTTTTCGTCAAGCACCACCACGACCTGCCGGTGATTTTACTGGG GGCCGACGACTGGAACATTTCCCACCAAGTTAACGAGTACACCACCCTGTCTTCTTTTGAGGCAACGATTGAAGCTTACA AGCGCTTGATCCCGGCCTTTTTTGAGTAA Protein sequence : MDQTERTRVLSDLVKINSVNGNELEVANYLRRLFEQHGLTADVQPFGEQRANLIVEVGAGKPILGITGHMDTVALGDEKK WHHAPLSATIEGDRLYGRGAADMKSGLAAQVIALIELVESGTLTGHVRFIATAGEEYGTPGANRLEEAGVAKDLNALVVG EPTSGNVIYAHSGSYNYRIVSTGQAVHSSEPERGQNALEPLVDFALAERDLFFDVPDDPCLGPLKHSVTIIQGGEQVNTI PDYAELRGNIRPTMRFDNDHVTARLQAAVDRLNQEGAAHLTLEVLHSWRPVASNPNGDFVKRALQASQEAFAKYPGHATP ELGVIHGATDASVFVKHHHDLPVILLGADDWNISHQVNEYTTLSSFEATIEAYKRLIPAFFE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAC20637.1 | - | Not tested | Internalin | Protein | 1e-64 | 42 |
| dapE | CAA07459.1 | succinyl-diaminopimelate desuccinylase | Not tested | Internalin | Protein | 6e-64 | 42 |
