|
Name : LAF_1317 (LAF_1317) Accession : YP_001844133.1 Strain : Lactobacillus fermentum IFO 3956 Genome accession: NC_010610 Putative virulence/resistance : Unknown Product : DNA-directed DNA polymerase I Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0749 EC number : - Position : 1495840 - 1498500 bp Length : 2661 bp Strand : - Note : - DNA sequence : ATGGCTAAGCAGCTTTTATTAATCGACGGGAATAGCATCGTCTTCCGGGCGTTTTTCGCCATGCACAACCAGATGGAGAA GTTTACCAACCAGGCGGGGTTACACACGGCGGCCATCTACGGGTTCAAACTGATGCTGGATCACATATTAAAGGAGGTTC AACCAGACGCCGCCTTGGTGGCCTTTGACGCCGGCAAGACCACCTTTCGGACCGAAAAGTACGCCGATTACAAGGGGAGC CGTGATAAAACGCCGGGTGAGCTAGTGGAACAACTGCCCTACGTACGCAAGCTGGTCGAAGCAAGTGGCCTCCACGCTTA CGAACTAGTTAATTACGAGGCCGATGACATCATTGGGACCCTGGCCAAGGAAGGGGACCAGGCCGGCTTTGAGACGATGA TTGTGACCGGGGACCGTGATTTAACCCAGCTGGCCACCGACCACACCACCGTGGCCGTTACCAAGCGCGGGGTGACCCAA ACCGAGGAGTTCACCCCGGCATACATGCAAGAAAAGCTGGGCGTCACCCCACGCCAATACATCGATGTGAAGGCCCTGAT GGGGGATAGCTCCGATAACTACCCCGGGGTTACCAAGATTGGTGAAAAAACGGCGGTCTCCCTGATTCAGGAATACGGCT CTTTGGACGGGTTGTACGAAAACATCGCCGCGATGAAAAAGTCCAAGCGCAAGGAAAACCTGATCAACGAAGAAAAGATT GCTCGGGAGTGCCAAGACCTAGCGACTATCCGCCGGGACGCTCCGCTGGCAATCGGCTTAAAAGACATCGCCTACCAGGG ACCGGACGAAGCCGCCCTAATTGACCTGTACCAAGAATTAGACTTCAAGTCCTTTTTAAAGGAGCTAGGCGCCCAAGAAG GGGGCGCACAAGTTGACCAAGCGCCAATCGAATACCAGGTGTTAGACGAAGACAACATGGCGTTGGTTGATCAACTCGGG GCTACCGTTTGCTTTCAATTAGAAATGCCGGACGCTAACTACCACGAATCACCACTGGCCGGCTTTGTAATTGGCGATGG CAAGCGGTGGCTAGTCAGCCGTAACGCCGACCTATTAACCACCGCCCCGCTAAAGAAGCTACTCGAAGACCCAGCGGTTG AAAGGGACGTCTTCAACGCCAAGGCCCAGCTGGTCGGCTTACACCGGTTAGGGGTTGACCTGGCCGGGGTCGACTTTGAC TTGCTCTTGGCTTCTTACCTGCTCAACACGAGTGAAAACGCCAATGACTTAGGGGTGCTGGCGGCCGCCCACGATTACCA CCAGGTCCAAACTGATGAAGAGGTTTATGGGAAGGGTGCTAAGCGGGCCATTCCGGCTGACGACGAGGTCTTTTTCACCC ACCTAGCCAAAAAGGCCCGGGCGATTAGGGACCTTAAAGAACCCCTATACCAACAGCTGACCGATAACGAGCAACTACCG CTCTACGAAGACATTGAACGCCCCTTGTCCGCGGTCTTGGCCCACATGGAAATCACCGGGATTCATGTCGACGCAGCGAC CCTAAAGGAGATGGGCTCCAAGTTAGTTGAACGTGAGGCGGAGCTAGAACAGGCGATTTACCAAGAAGCCGGCGAGGAGT TTAACATTAACTCCCCGAAGCAGCTGGGCGTAATCTTATTTGAAAAGATGAAGCTACCGGTCATCAAAAAGACCAAGACC GGCTACTCGACGGCCGTCGACGTCTTAGAAAAGCTGGCCGACCGGGCACCGATCGTCCAAGACATCTTGGCCTACCGGCA AATCAGCAAGCTGCAATCAACTTACATCACCGGCTTACTCAAGGTGATCCACCAAGACGACCAAAAGATCCACACCCGCT ACTTGCAGACCCTAACGGCGACCGGCCGTCTCTCGTCAGTCGACCCGAACCTGCAAAACATTCCGGTTCGCCTGGAAGAA GGGCGCCAAATCCGGCGGGCCTTTACCCCCTCGGCACCGGGGTGGAAGATCTTTTCGTCGGACTACTCGCAGGTTGAACT GCGGGTTTTGGCCCACGTCACCGGCGATAAGAACATGCAGGCTGATTTCTTGGCGGGCAAGGACATCCACGCCGCCACGG CCAAGCGGATCTTCCACTTGCAAAGCGAAGACGAAGTGACCCCCAACATGCGCCGGCAGGCCAAGGCGGTCAACTTCGGG ATTGTGTACGGGATTTCCGATTACGGCCTAGCCCAAAACATCCACGTCTCCCGCCCACAGGCCCACGAATTCATCCAGAG TTACTTCAAGGAATTCCCGGGGGTGGAAAAGTACGTTCACGACATCGTGGAACTGGCTAAACAGCAGGGCTACGTCGAAA CCCTGACCCACCGGCGCCGTTACCTGCCGGAAATTCACGCGAAGTCCTTTACCCAGCGTTCCTTTGCCGAACGAATGGCC ATGAACACCCCGATTCAGGGGTCGGCTGCCGACATCATCAAGATTGCCATGATCCGAATGGAAAAGGCCTTAAAGGAGCG GGGCTTACGGGCCCGGATGCTCTTGCAGATCCATGACGAACTGGTCTTTGAAGCGCCGGAAGAAGAAATCGCCATCTTAG AGGAGCTGGTTCCTTCCATTATGGACTCGGCCGTAAAGCTAGACGTACCACTGAAGGTGGAAAGCAAGTCCGGGGCAACC TGGTACGACCTGAAAAAATAA Protein sequence : MAKQLLLIDGNSIVFRAFFAMHNQMEKFTNQAGLHTAAIYGFKLMLDHILKEVQPDAALVAFDAGKTTFRTEKYADYKGS RDKTPGELVEQLPYVRKLVEASGLHAYELVNYEADDIIGTLAKEGDQAGFETMIVTGDRDLTQLATDHTTVAVTKRGVTQ TEEFTPAYMQEKLGVTPRQYIDVKALMGDSSDNYPGVTKIGEKTAVSLIQEYGSLDGLYENIAAMKKSKRKENLINEEKI ARECQDLATIRRDAPLAIGLKDIAYQGPDEAALIDLYQELDFKSFLKELGAQEGGAQVDQAPIEYQVLDEDNMALVDQLG ATVCFQLEMPDANYHESPLAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVERDVFNAKAQLVGLHRLGVDLAGVDFD LLLASYLLNTSENANDLGVLAAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLP LYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVEREAELEQAIYQEAGEEFNINSPKQLGVILFEKMKLPVIKKTKT GYSTAVDVLEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEE GRQIRRAFTPSAPGWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFG IVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHRRRYLPEIHAKSFTQRSFAERMA MNTPIQGSAADIIKIAMIRMEKALKERGLRARMLLQIHDELVFEAPEEEIAILEELVPSIMDSAVKLDVPLKVESKSGAT WYDLKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| polA | YP_281523.1 | DNA polymerase I | Not tested | Not named | Protein | 0.0 | 54 |
