Gene Information

Name : XfasM23_0464 (XfasM23_0464)
Accession : YP_001829185.1
Strain : Xylella fastidiosa M23
Genome accession: NC_010577
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 558321 - 559613 bp
Length : 1293 bp
Strand : +
Note : TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: xac:XAC2105 polysaccharide biosynthetic protein

DNA sequence : 
ATGGTTGCTGATAAGCAAGGGGGGCCAACGTTGGCGCGCATCGCCGTGGTTGGACTAGGGTATGTGGGATTGCCGTTGGC
GGTTGCGTTTGGTCGACAGCGTCCGACACTTGGGTTCGACATTGATATATGTCGGGTACAGCAGTTGTGTGCCGGTCATG
ACATTACTTGTGAAATTGAGCTTGAGGAACTCCAAGCTGCGCGACATTTGCGTTATAGCAGTGATCCTCGGGAATTGAGT
GACTGTCAGATTTTCATCATTACGGTGCCTACCCCTATTGATGTGGTTGAGCAACCGGATTTGGGGCCGCTTCGTTCGGC
CAGCATGTTGGTTGCGTCGGTACTTAAGCCTGGGGATTTAGTGATCTATGAGTCCACAGTTTATCCGGGCACAACGGAGG
AAGTCTGTGTGCCATTGCTGGAGGCTGGGTCTGGGTTGCGCTTTAATGTCGATTTTCATTGTGGTTACAGTCCTGAGCGG
ATTAACCCTGGTGATCGTAAGCGTCGGCTACAGGACATCTGCAAGATTATTTCAGGTTCCACCCCTGATATTACAGCTGT
CGTGGACGCGTTATATTCGCAGATCATCGTTGCTGGTACTTGGTGTGCTCCGTCGATCAGAGTTGCCGAGGCAGCTAAGG
TGGTTGAGAACATTCAGCGTGACGTGAATATTGCGTTGGTCAATGAGTTGGCATTGATCTTTGATCGGCTCGGTATCGAC
ACCTTGGACGTTCTCGAAGCGGCAGAAACCAAGTGGAATTTTTTGCCTTTCCGCCCGGGTTTGGTGGGTGGTCATTGCAT
CGGTGTGGATCCTTACTATTTGTTGCACAAATCCGAGAGTGTGGGGTATTACCCGGATTTGATTCATACGGCACGTCGCG
TTAACAATCGTGTTAGTCGGCATGTTGTGGACCGTGTTGTGGCTTTACTTGGTGAGCTTAGTGTGCCGATGACACGTGCC
GTGGTGCTTGTGTTGGGTGTTACCTTCAAGGAAGATTGCCCCGATTTACGTAACAGCCGCGCTTTGGATTTGGTGCGCAT
GTTCAGGACTTTAGGTGCGCAAGTCGATGTTTGCGATCCTTGTGCTGATCCGCAGCAAGCGTTGGAGCATGAGGCTGTCA
CGTTGTGTACGGAGCCCAAGGCCGGTGCTTATGATGCAATTGTGCTCGCGGTGGCGCATGCCCAGTACCGAATGTACGAT
GTAGCGACTATTGCAGCTCTAGGTAAGTCGCAGGCGGTGGTTTATGATGTCAAATCAGTGTGGCCGCGTGCAGCGGTAAC
TGATCGTCTATAG

Protein sequence : 
MVADKQGGPTLARIAVVGLGYVGLPLAVAFGRQRPTLGFDIDICRVQQLCAGHDITCEIELEELQAARHLRYSSDPRELS
DCQIFIITVPTPIDVVEQPDLGPLRSASMLVASVLKPGDLVIYESTVYPGTTEEVCVPLLEAGSGLRFNVDFHCGYSPER
INPGDRKRRLQDICKIISGSTPDITAVVDALYSQIIVAGTWCAPSIRVAEAAKVVENIQRDVNIALVNELALIFDRLGID
TLDVLEAAETKWNFLPFRPGLVGGHCIGVDPYYLLHKSESVGYYPDLIHTARRVNNRVSRHVVDRVVALLGELSVPMTRA
VVLVLGVTFKEDCPDLRNSRALDLVRMFRTLGAQVDVCDPCADPQQALEHEAVTLCTEPKAGAYDAIVLAVAHAQYRMYD
VATIAALGKSQAVVYDVKSVWPRAAVTDRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 4e-99 53
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 4e-99 53
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 8e-82 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XfasM23_0464 YP_001829185.1 nucleotide sugar dehydrogenase VFG0431 Protein 2e-99 53