Gene Information

Name : XfasM23_2035 (XfasM23_2035)
Accession : YP_001830707.1
Strain : Xylella fastidiosa M23
Genome accession: NC_010577
Putative virulence/resistance : Virulence
Product : two component sigma-54 specific Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2277462 - 2278943 bp
Length : 1482 bp
Strand : -
Note : PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: xcv:XCV3351 two-component system response regulator PilR

DNA sequence : 
ATGCGTTGCCGTGCGTCTGAAGACGATGGGAATTGTCCATCTTCAGTCTGCTGCGTTATCTTGGCATTCATGAATGAATC
CCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTATGGGGCTGCGTA
TCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCACCGACATGCGT
TTACCTGACGGCAGTGGCATTGAGCTGGTGAAAAAGATTGTGCGTCATTATCCACGCACCCCGGTGGCCATGATCACTGC
TTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGTTGATCTGAACG
TCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGCCACAAAGCCCC
AGCCAACGTCTCCTTGGTGAATCATCACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGTAGTCAAGCCCC
GGTTTATATCCTTGGTGAATCAGGAGTTGGTAAAGAACTGGTTGCACGTACGATCCACGAACAGAGTGTGCGTGCTGCTG
GGGCGTTCGTGCCGGTCAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACAAGAAAGGGAGT
TTCACCGGTGCGCATACTGATAAGCCAGGTTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGATGAAGTTGCCGA
ATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGCAACCGTTGAGG
TACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGCTTCCGTCACGAT
TTGTACTACCGCATTAATGTAATCGAGATACGTGTTCCACCGCTACGTGAGCGTGCTGGCGATTTGCCGCATCTTGCTGC
AGCCATTGTGGCTCGCTTGGCACACACGCATGGGCGGGCGGTCCCGTTGCTTTCACCCTCCGCCTTGGAGGCGTTAGAAC
ATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAGATGATCATATC
GGTGCCGCGGATCTGCACCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCCACAGTTCTCCC
GATTGTGCCTGCGGACGCATCAGCATCGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCCTCGTACATGGAGCAGCTGG
AACGTGCTGCCATTCAAAAGGCGTTGGAAGAGAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTGGCATCACTTTC
CGTGCATTACGTTACAAACTAAAGAAGCTGGGTATGGAGTGA

Protein sequence : 
MRCRASEDDGNCPSSVCCVILAFMNESRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMR
LPDGSGIELVKKIVRHYPRTPVAMITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSP
SQRLLGESSPMAQLRATIAKVARSQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGS
FTGAHTDKPGLFQSAGGGTLFLDEVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHD
LYYRINVIEIRVPPLRERAGDLPHLAAAIVARLAHTHGRAVPLLSPSALEALEHYSFPGNVRELENILERALALTEDDHI
GAADLHLPQGSLHGQGLPLPLVPTVLPIVPADASASVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITF
RALRYKLKKLGME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 8e-101 47
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 8e-101 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XfasM23_2035 YP_001830707.1 two component sigma-54 specific Fis family transcriptional regulator BAC0089 Protein 5e-76 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XfasM23_2035 YP_001830707.1 two component sigma-54 specific Fis family transcriptional regulator VFG1214 Protein 6e-126 59
XfasM23_2035 YP_001830707.1 two component sigma-54 specific Fis family transcriptional regulator VFG0116 Protein 6e-59 41