Gene Information

Name : XfasM23_1085 (XfasM23_1085)
Accession : YP_001829787.1
Strain : Xylella fastidiosa M23
Genome accession: NC_010577
Putative virulence/resistance : Virulence
Product : Fis family nitrogen metabolism transcriptional regulator NtrC
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1228630 - 1230057 bp
Length : 1428 bp
Strand : +
Note : KEGG: xcb:XC_0198 two-component system regulatory protein; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase

DNA sequence : 
ATGGTTGAGATTGATGCGACTTCCCCACGCATCTGGGTGGTTGACGACGATCGCTCGGTACGCTTCGTGTTATCTACTGC
ACTGCGTGATGCAGGCTATATCGTGGAAGGTTTCGAGAGTACTTGCGCAGCGTTGCAAGCCCTAGCAGCCTCCCCAATCC
CAGACTTATTGTTCACCGACGTACGCATGCCTGGTGATGATGGTTTGATTTTGCTGGACAAGCTCAAAGCACGCCATCCG
CACCTTCCAGTAATTGTTATGTCTGCCTACACCGATGTGGCTAGCACTGCCGGTGCATTTCGCAGTGGTGCACATGAATT
CTTGTCCAAGCCATTTGATCTAGACGATGCGGTTGCGTTGGCAGCTCGTGTGTTGCCACATACACAAGGATCTCATGGGG
GATCACCCATATTGCCTGCTGCCAACAGTAATCCCGTCTTGATCGGCAGCACTCCGGTGATGCGTGCTTTGTTCCGTGCA
ATCGGACGGTTGGCGCAGGCACCACTCTCGGTGCTGATTAACGGTGAAACAGGTACTGGCAAAGAGCTCGTTGCACGTGC
GTTACACAACGAATCTCCGCGTGCGCAGGCGCCGTTCGTTGCGCTGAATGCTGCGGCGATTCCAACCGAGCTTTTGGAGA
GCGAGTTGTTCGGTCACGAGGCCGGCGCGTTTACAGGAGCGACCAAACGTCATATTGGCCGCTTTGAGCAAGCCGATGGC
GGCACTTTATTTTTGGATGAAATCGGCGATATGCCGTTGTCTTTGCAGACGAGACTGTTACGTGTACTGGCTGAAAATGA
ATTCTTCCGGGTCGGGGGCCGCGAACTGATCCGTGTCAATGTCCGTGTGATTACTGCGACCCATCAGGATCTTGATATGT
TGGTCGAGCAGGGGCGTTTTCGTTCCGATCTCTTGCACCGTTTAGATGTAGTGCGCTTGCAACTGCCATCGTTACGTGAG
CGGCGTGATGATGTGGCACAGTTGGCCGAGAATTTTTTGGTAATGGCTGGGCACAAGCTGGATATCTCAGTTAAACGTTT
GTCTGCCGATGCGCTAGAGATACTGCGTCGCTACGATTGGCCAGGTAATGTCCGTGAGCTCGAAAATATTTGCTGGCGAT
TAGCTGCTTTGGTGAACACTGAGACAATTGATGCCAATGATGTTGAAGCTGTGTTAACACATGGCAAGCGCAAGCGTTGT
AACACTGAAAGCGATTGGGATATCCATTTAGCCAAATGGGCGGAAGACCGCTTAGCTGCAGGCGCAACTGCTGTGCATGC
CGAAGCTCGCAAATGTTTGGACCGAACGCTACTGGATGTGGCATTGCGTTTGACGCAGGGCCGTCGTGCCGAAGCAGCTG
CACGTCTTGGTCTGGGTCGTAACACGTTGACCCGCAAGCTTGGCTCAAGTCAACGTCGTAGGAGGTAA

Protein sequence : 
MVEIDATSPRIWVVDDDRSVRFVLSTALRDAGYIVEGFESTCAALQALAASPIPDLLFTDVRMPGDDGLILLDKLKARHP
HLPVIVMSAYTDVASTAGAFRSGAHEFLSKPFDLDDAVALAARVLPHTQGSHGGSPILPAANSNPVLIGSTPVMRALFRA
IGRLAQAPLSVLINGETGTGKELVARALHNESPRAQAPFVALNAAAIPTELLESELFGHEAGAFTGATKRHIGRFEQADG
GTLFLDEIGDMPLSLQTRLLRVLAENEFFRVGGRELIRVNVRVITATHQDLDMLVEQGRFRSDLLHRLDVVRLQLPSLRE
RRDDVAQLAENFLVMAGHKLDISVKRLSADALEILRRYDWPGNVRELENICWRLAALVNTETIDANDVEAVLTHGKRKRC
NTESDWDIHLAKWAEDRLAAGATAVHAEARKCLDRTLLDVALRLTQGRRAEAAARLGLGRNTLTRKLGSSQRRRR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-48 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-48 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XfasM23_1085 YP_001829787.1 Fis family nitrogen metabolism transcriptional regulator NtrC BAC0467 Protein 4e-69 46
XfasM23_1085 YP_001829787.1 Fis family nitrogen metabolism transcriptional regulator NtrC BAC0089 Protein 8e-64 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XfasM23_1085 YP_001829787.1 Fis family nitrogen metabolism transcriptional regulator NtrC VFG1249 Protein 2e-60 43
XfasM23_1085 YP_001829787.1 Fis family nitrogen metabolism transcriptional regulator NtrC VFG1214 Protein 4e-59 41