Gene Information

Name : SGR_6642 (SGR_6642)
Accession : YP_001828154.1
Strain : Streptomyces griseus NBRC 13350
Genome accession: NC_010572
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 7934828 - 7935619 bp
Length : 792 bp
Strand : +
Note : -

DNA sequence : 
ATGAACCACCCCGCGGACGCCGGTGAAGGACTGCGCGCCGAGCGGGTCCGCCGGGAGGCGGGCGGCCGGCTCATCCTCGA
CGGCGTGGCCATCACCCCGCCGCCCGGCGCCACCGTCGGACTGCTCGGCCCCAACGGCTCCGGCAAGTCCACCCTGCTGC
GGATCCTCGCGGGCCTCCTCGCCCCGGACGCCGGGGTCGTCACCCTGGACGGCAACGCTCTCGCCGGCCTCGGCCGTCGC
ACCGTCGCCCGCCGGATCGCCGTCGTCGACCAGCACGCGGTCACCCAGGTCGACCTCAGCGTCCTGGACGTCGTACGCCT
CGGCCGTATCCCGCACCGCCGCGCCTGGTCCGCCCCCGGCCGCACCGACGAGGACGCCGTCGCCGAGGCGCTGCGGCGCA
CCGGGCTGACCGGCCACGCCGGGCAGTCCTGGCACACCCTGTCCGGCGGTGAACGCCAACGCGTCCAGATCGCCCGCGCC
CTGGCCCAGCAGCCCCGCGAACTCCTGCTCGACGAACCGACGAACCACCTCGACATCCAGCACCAGCTGGACCTGCTCGC
GCTGATCGCCGACCTCCCCGTCACCAGCGTCGTCGCGCTGCACGACCTCAACCTCGCCGCGATGTTCTGCGACCGGATCA
CCGTGATGAAGGCCGGCCGGGTCGTCGCCGGCGGCACCCCCGTCGAGGTCATCACCGAGGAGCTCATCGCGGACGTCTAC
GGGGTCGGAGCGGTCGTCACCCCGGACGGGCCCGACGGGCGCCCCTCGGTGCGGTTCCTGCCGCGACGCTGA

Protein sequence : 
MNHPADAGEGLRAERVRREAGGRLILDGVAITPPPGATVGLLGPNGSGKSTLLRILAGLLAPDAGVVTLDGNALAGLGRR
TVARRIAVVDQHAVTQVDLSVLDVVRLGRIPHRRAWSAPGRTDEDAVAEALRRTGLTGHAGQSWHTLSGGERQRVQIARA
LAQQPRELLLDEPTNHLDIQHQLDLLALIADLPVTSVVALHDLNLAAMFCDRITVMKAGRVVAGGTPVEVITEELIADVY
GVGAVVTPDGPDGRPSVRFLPRR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 3e-40 46
phuC YP_005682167.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 2e-32 44
phuC YP_005684259.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 2e-32 44
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 3e-32 44
phuC YP_005686351.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 4e-32 43
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-37 42
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 8e-33 41
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 8e-33 41
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 7e-33 41
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 7e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SGR_6642 YP_001828154.1 ABC transporter ATP-binding protein BAC0164 Protein 7e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SGR_6642 YP_001828154.1 ABC transporter ATP-binding protein VFG0925 Protein 3e-36 43
SGR_6642 YP_001828154.1 ABC transporter ATP-binding protein VFG1042 Protein 6e-38 42