Gene Information

Name : SGR_6618 (SGR_6618)
Accession : YP_001828130.1
Strain : Streptomyces griseus NBRC 13350
Genome accession: NC_010572
Putative virulence/resistance : Virulence
Product : ABC-type Fe3+-siderophore transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 7906276 - 7907115 bp
Length : 840 bp
Strand : +
Note : -

DNA sequence : 
ATGACCACGCACCACCGACTGACCGCCGAAGGACTCACCCTCGGCTACGGCGACCGCACCGTCGTCGACTCCCTCGACCT
CGCCGTACCGCCCGGCCGGATCACCGTCATCGTCGGCGCCAACGCCTGCGGCAAGTCGACGCTCCTGCGCTCCATGTCCC
GGCTGCTCGCCCCCCGGGCGGGCCGCGTCGTCCTGGACGGCAAGGAGGTCCACCGGCTGCCCGCCAAGGAACTGGCCCGC
ACCCTCGGCCTGCTGCCCCAGTCGCCCGTCGCCCCCGAGGGCATCACCGTCTTTGACCTCGTCGGCCGCGGCCGCCACCC
GCACCAGGGGATCTTCTCCCGCTGGAACGAGAAGGACGACGCCGCCGTGGCCGCCGCCCTGGAAGCCACGCACACCGAAC
CGCTCGCCGACCGAGCGGTGGACGAACTATCCGGCGGCCAGCGCCAGCGCGTCTGGATCGCGATGGCCCTCGCCCAGCAG
ACCGACCTGCTGCTGCTCGACGAGCCGACCACCTTCCTCGACGCCAGTCACCAGATCGAGGTCCTGGACCTCCTGACCGA
CCTGAACCGCTCGCGCGGCACCACCATCGTGATGGTCCTGCACGACCTCAACCTCGCCGCCCGGTACGCGGACCACCTGA
TCGCGCTGGCCAGCGGCGGGCTCCACGCCTCCGGCACCCCGGCCGAGGTGCTGACGGAGGAGACCGTCCGGGCCGTGTTC
GACCTCGACAGCCGCATCATCGAGGACCCCGTGTCGGGTCGGCCCCTGATGCTCCCGATCGGCCGCCACCACGTCCTGGA
CCGGGCCGACCCGCTGACCGTCGGGGAGCCGACCGCGTGA

Protein sequence : 
MTTHHRLTAEGLTLGYGDRTVVDSLDLAVPPGRITVIVGANACGKSTLLRSMSRLLAPRAGRVVLDGKEVHRLPAKELAR
TLGLLPQSPVAPEGITVFDLVGRGRHPHQGIFSRWNEKDDAAVAAALEATHTEPLADRAVDELSGGQRQRVWIAMALAQQ
TDLLLLDEPTTFLDASHQIEVLDLLTDLNRSRGTTIVMVLHDLNLAARYADHLIALASGGLHASGTPAEVLTEETVRAVF
DLDSRIIEDPVSGRPLMLPIGRHHVLDRADPLTVGEPTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-57 52
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 1e-61 51
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 1e-61 51
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-50 48
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-48 47
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-48 47
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-48 47
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-48 47
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 1e-27 43
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-45 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SGR_6618 YP_001828130.1 ABC-type Fe3+-siderophore transporter ATP-binding protein BAC0164 Protein 1e-50 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SGR_6618 YP_001828130.1 ABC-type Fe3+-siderophore transporter ATP-binding protein VFG0925 Protein 5e-63 55
SGR_6618 YP_001828130.1 ABC-type Fe3+-siderophore transporter ATP-binding protein VFG1042 Protein 1e-50 48