Gene Information

Name : SGR_6454 (SGR_6454)
Accession : YP_001827966.1
Strain : Streptomyces griseus NBRC 13350
Genome accession: NC_010572
Putative virulence/resistance : Virulence
Product : chaperone
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 7710758 - 7713298 bp
Length : 2541 bp
Strand : +
Note : -

DNA sequence :
ATGTCGATGGCGTTCGGTTCACCCCTCGGTCCGTCCGATCCGTTCAGTGACCTGTTGAACCGGTTCTTCGGCATGTCGCC
GGCCTCCTCGCCGCCGGCCATGCAGCGCGTCCCGATCGGGCGGCTGCTGACGGAGTCCTCCCATGAACTGCTGGGCCGGG
CCACCCGCCGCGCGGCCGAGGACGGAACGGCGGACCTCGACACCGAGCACCTGCTGTGGGCGGCGACCCGGGTCGAGCCC
TCGCGCGGGCTGCTGTCCCGGGCGGGGGTCGACCCCGACGACCTCGCCGCACGGCTCGACGAGGTGCTGCCCCGGGAGTC
CGGCGAACCGTCCGCCGAGCCCGGTCTCACCCCGGCGGCCAAGCGGACCCTCACCGCCGCCTACGCGCGATCGCAGGCCG
CGGGGGTGTCCTACATCGGCCCCGAGCACATCCTGGGCGCGCTCGTCGACGACGCGGACTCCGGGGCCTCCCGCTTCCTG
CGCGCGGACGACCTGGACGTGGGGAAACTGCGCGGCGCCGCGGACCGGGCGGCGGGCGCGGACGGGGCCTCCGGCGGAGT
GAAGCAGCCCTCGGAGACCCTGGACGAGTTCGGCAGGGACCTGACGGAGGAGGCGAAGGCCGGGAGGCTCGACCCCGTCG
TCGGACGGGCCGACGAGATCGAGCAGACCATCGAGATCCTCTCCCGGCGCTCCAAGAACAACCCCGTCCTCATCGGCGAG
CCCGGTGTCGGCAAGACCGCCATCGTGGAGGGCCTCGCCCAGAGCATCGTCGCCGGCGAGGTGCCCGACACCCTCAAGGA
CAAGCGGGTCGTCTCGCTCGACCTGTCCGGCATGGTCGCCGGAGCCCAGTACCGGGGCCAGTTCGAGGAGCGGCTGAAGA
AGGTCATCGAGGACGTGCAGAAGGCCGAAGGGGAGATCATCCTCTTCATCGACGAACTCCACACCGTCGTCGGCGCGGGC
GCCACGGGCGAGGGTTCGATGGACGCGGGCAACATGCTCAAGCCCGCCCTCGCCCGCGGCGAGCTCCACGTGGTGGGCGC
GACGACCATCGACGAGTACCGCAAGCACATCGAGAAGGACGCCGCCCTGGAGCGCCGCTTCCAGCCCGTCCTGATCCCGG
AGCCGACCGTCCAGGAGACCGTGCAGATCCTCGAAGGGCTGCGGGACGCCTACGAGGCCCACCACCAGGTCCGCTTCGCC
GACGGCGCCCTGACATCGGCGGCCGAGCTGTCCGACCGCTACATCAGCGACCGCTTCCTGCCCGACAAGGCCATCGACCT
GGTGGACCAGGCCGGGGCCCGGGTACGGCTGCGCAGCGCCAACCGCTCCACCGAGGTCGTCAGCCGCGAGGACCGCCTCG
CCAAGCTGCGGCGCGAGAAGGACGAGGCCGTCGCGGGCGAGGAGTTCGAGAAGGCCTCCGGGCTGAAGCGGCAGATCGCC
GAGGTGGAGGGGGAGCTCGCCGGGATCGAGGAGCGCCGGGAGGGCGTCGTCTCGGTCACGGCCGCCGACATCGCCGACAT
CGTCTCCCGCCGCACCGGCATCCCGGTCTCCCAGCTCACCGCCGGCGAGAAGGAGAGGCTCCTCAAGCTGGAGGAGGAGA
TGCACGCCCGGATCGTCGGCCAGGACGAGGCGGTCACCGCGGTCTCCGAAGCCGTACGGCGCAACCGCGCGGGCATGGGC
GACCCGAACAGGCCCGTCGGCTCGTTCCTCTTCCTCGGGCCCACCGGCGTCGGCAAGACCGAACTCGCCAAGACCCTGGC
CGAGCTGCTGTTCGGCGCCGACGACCGCATGGTCCGGTTCGACATGAGCGAGTTCCAGGAGAAGCACACGGTCGCCCGGC
TCGTCGGAGCACCGCCCGGATACGTCGGTTACGACGAGGCCGGCCAGCTGACCGAGAAGGTGCGGCGCAACCCCTACAGC
GTGGTGCTGTTCGACGAGGTCGAGAAGGCGCACCCCGACGTCTTCAACACGCTGCTCCAGATCCTCGACGACGGCCGGCT
CACCGACGGACAGGGCCGAACCGTCGACTTCCGCCACTGCGTCGTCATCATGACGTCCAACATCGGCGCCCACCGCATCC
TCGCCCACCAGGGCGACGCCGCCGATCTCAAGGACGAGCTGATGGAGGACCTGCGGGGGAGGTTCCTGCCCGAGTTCCTC
AACCGCATCGACGACATCATCGTCTTCCACAGCCTCACCGAAGACGATCTGTCCGAGATCGTCGACCACCTCCTGGACCG
CAGCAAGCACCGCGTCCACGCCCAGAACATGACCCTGGAGGTCACCGAGGCGGCGAAGAAGCTCCTGGTCGCCCACGGCT
ACCAGCCGGAGTTCGGCGCGCGTCCCCTGCGCCGCACGATCCAGACCGAACTGGACAACCGCGTGGCCTCCCTGCTGCTC
GGCGGCGAGGCCGACCCCGGGGACACGATCGTCGCCGACGTGGTCGACGACTCCCTGCACTGCACCATCCGCAAGGGCGA
CGGCGCCCCGAAGGCCCCCGAGGCCGCCGCGGCGACCGCCGCTCCCGACGGCGAGGAGTGA

Protein sequence :
MSMAFGSPLGPSDPFSDLLNRFFGMSPASSPPAMQRVPIGRLLTESSHELLGRATRRAAEDGTADLDTEHLLWAATRVEP
SRGLLSRAGVDPDDLAARLDEVLPRESGEPSAEPGLTPAAKRTLTAAYARSQAAGVSYIGPEHILGALVDDADSGASRFL
RADDLDVGKLRGAADRAAGADGASGGVKQPSETLDEFGRDLTEEAKAGRLDPVVGRADEIEQTIEILSRRSKNNPVLIGE
PGVGKTAIVEGLAQSIVAGEVPDTLKDKRVVSLDLSGMVAGAQYRGQFEERLKKVIEDVQKAEGEIILFIDELHTVVGAG
ATGEGSMDAGNMLKPALARGELHVVGATTIDEYRKHIEKDAALERRFQPVLIPEPTVQETVQILEGLRDAYEAHHQVRFA
DGALTSAAELSDRYISDRFLPDKAIDLVDQAGARVRLRSANRSTEVVSREDRLAKLRREKDEAVAGEEFEKASGLKRQIA
EVEGELAGIEERREGVVSVTAADIADIVSRRTGIPVSQLTAGEKERLLKLEEEMHARIVGQDEAVTAVSEAVRRNRAGMG
DPNRPVGSFLFLGPTGVGKTELAKTLAELLFGADDRMVRFDMSEFQEKHTVARLVGAPPGYVGYDEAGQLTEKVRRNPYS
VVLFDEVEKAHPDVFNTLLQILDDGRLTDGQGRTVDFRHCVVIMTSNIGAHRILAHQGDAADLKDELMEDLRGRFLPEFL
NRIDDIIVFHSLTEDDLSEIVDHLLDRSKHRVHAQNMTLEVTEAAKKLLVAHGYQPEFGARPLRRTIQTELDNRVASLLL
GGEADPGDTIVADVVDDSLHCTIRKGDGAPKAPEAAAATAAPDGEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SGR_6454 YP_001827966.1 chaperone VFG0080 Protein 3e-157 53
SGR_6454 YP_001827966.1 chaperone VFG0079 Protein 0.0 50