Gene Information

Name : SGR_3426 (SGR_3426)
Accession : YP_001824938.1
Strain : Streptomyces griseus NBRC 13350
Genome accession: NC_010572
Putative virulence/resistance : Virulence
Product : ATP-dependent protease subunit
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 4013208 - 4015793 bp
Length : 2586 bp
Strand : -
Note : -

DNA sequence :
GTGGACGCCGAACTGACCAACAAGAGCCGGGACGCCATCAACGCGGCCACCAGCAGGGCCGTGAAGGACGGGCACGCCGA
TCTCACCCCGGGGCACCTGCTCCTCGCGCTCCTGGAGGGCCAGGACAACGAGAACGTCATCGACCTGCTCGCCGCCGTCG
AGGCCGACCAGGCAGCGGTGCGGGGCGGGACCGAGCGGCTGCTCGGGGGCCTGCCCAGCGTCACCGGCTCCACCGTCGCC
CCGCCGGCGCCCAACCGTGAGCTGCTGGCCGTCATCCAGGACGCCGCCCAGCGGGCGAAGGAGCTGGGCGACGACTACAT
CTCCACCGAGCACCTGCTCATCGGCATCGCGGCCAAGGGCGGCCGTGCCGGTGAGATCCTCGACGGGCAGGGCGCCAGTG
CGAAGAAGCTGCTGGCCGCGTTCGAGACGAGCAGGGGAGGGCGCCGGGTGACCACACCCGACCCGGAGGGCCAGTACAAG
GCCCTGGAGAAGTTCGGCACCGACTTCACGGCCGCCGCGCGCGAGGGCAAGCTGGACCCGGTCATCGGCCGCGACCAGGA
GATCCGCCGCGTCGTGCAGGTGCTGTCCCGCCGGACGAAGAACAACCCCGTCCTCATCGGCGAGCCCGGCGTCGGCAAGA
CCGCCGTCGTCGAGGGCCTCGCCCAGCGCATCGTCAAGGGTGACGTGCCGGAGAGCCTCAAGGACAAGCGGCTCGTCTCG
CTCGACCTCGGCGCGATGGTCGCGGGCGCGAAGTACCGCGGCGAGTTCGAGGAGCGCCTCAAGACCGTCCTCTCCGAGAT
CAAGGAGAGCGACGGCCGGATCATCACGTTCATCGACGAGCTGCACACCGTCGTCGGCGCGGGCGCGGGCGGCGACTCCG
CCATGGACGCGGGCAACATGCTCAAGCCGATGCTGGCCCGCGGCGAGCTGCGCATGGTCGGCGCGACGACGCTCGACGAG
TACCGCGAGCGCATCGAGAAGGACCCCGCCCTGGAGCGGCGCTTCCAGCAGGTGCTGGTCGCCGAGCCCTCCGTCGAGGA
CACCATCGCGATCCTGCGCGGGCTCAAGGGCCGCTACGAGGCCCACCACAAGGTGCAGATCGCGGACTCGGCGCTGGTGG
CCGCCGCCACCCTCTCCGACCGTTACATCACCTCCCGCTTCCTCCCCGACAAGGCCATCGACCTGGTCGACGAGGCCGCT
TCCCGGCTCCGTATGGAGATCGACTCCTCGCCGCTGGAGATCGACGAACTCCAGCGCTCCGTCGACCGGCTGCGCATGGA
GGAGCTGGCCCTCAAGAACGAGTCCGACCCCGCCTCCAAGCAGCGGCTGGAGAAGCTGCGCCGCGACCTCGCCGACAAGG
AGGAGGAGCTGCGCGGTCTCAACGCCCGCTGGGAGAAGGAGAAGCAGGGCCTCAACCGGGTCGGTGAGCTCAAGGAGCGC
CTCGACGAGCTGCGCGGACAGGCCGAACGCGCCCAGCGCGACGGCGACTTCGACGCCGCCTCCAAGCTGCTGTACGGGGA
GATCCCGGGACTGGAGCGGGAGTTGGAGGAGGCCGCCGAGGCGGAACAGGAAGCCTCCAAGGACACCATGGTCAAGGAGG
AGGTCGGCCCGGACGACATCGCGGACGTCGTCGGCGCCTGGACCGGCATCCCGGCCGGGCGGCTGCTGGAGGGCGAGACG
CAGAAGCTGCTGCGGATGGAGTCCGAGCTGGGCAAGCGGCTGATCGGGCAGAGCGAGGCCGTGCAGGCCGTCTCCGACGC
CGTACGCCGCACCAGGGCCGGGATCGCCGACCCGGACCGGCCCACCGGTTCGTTCCTCTTCCTGGGGCCCACCGGCGTCG
GCAAGACCGAGCTGGCCAAGGCGCTCGCGGACTTCCTGTTCGACGACGAGCGGGCCATGATCCGCATCGACATGAGCGAG
TACGGGGAGAAGCACAGCGTCGCCCGCCTGGTCGGCGCCCCGCCCGGCTACGTCGGATACGAGGAGGGCGGCCAGCTCAC
CGAGGCCGTCCGCCGCCGCCCGTACAGCGTCGTGCTGCTGGACGAGGTGGAGAAGGCCCACCCCGAGGTCTTCGACGTCC
TGCTCCAGGTCCTCGACGACGGCCGGCTCACCGACGGCCAGGGCCGCACGGTCGACTTCCGCAACACCATCCTCGTCCTC
ACCTCCAACCTCGGCTCCCAGTTCCTGATGGACCCGCTGGTCAAGCCCGAGGTCAAGAAGGAGCAGGTGCTGGACGTGGT
GCGGGCCTCCTTCAAGCCGGAGTTCATCAACCGGCTCGACGACCTGGTGGTCTTCTCCGCGCTGTCCGGGGACGAGCTGG
CGCACATCGCCGGGCTCCAGATCGACCGTCTCGCGGCCCGGCTGGCCGACCGGCGGCTCACCCTCGACGTCACCCCCGAG
GCGCTGGCCTGGCTCGCCCAGGAGGGCAACGATCCGGCGTACGGGGCGCGACCGCTGCGCCGGCTCATCCAGAGCGCGAT
CGGCGACCGGCTCGCCAAGGAGATCCTGTCCGGCGAGGTCCGCGACGGTGACACCGTACGGGTGGAGCGGACCGAGGACG
GGCTGATCGTCGGCCCCGCCTCGTAA

Protein sequence :
MDAELTNKSRDAINAATSRAVKDGHADLTPGHLLLALLEGQDNENVIDLLAAVEADQAAVRGGTERLLGGLPSVTGSTVA
PPAPNRELLAVIQDAAQRAKELGDDYISTEHLLIGIAAKGGRAGEILDGQGASAKKLLAAFETSRGGRRVTTPDPEGQYK
ALEKFGTDFTAAAREGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKDKRLVS
LDLGAMVAGAKYRGEFEERLKTVLSEIKESDGRIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDPALERRFQQVLVAEPSVEDTIAILRGLKGRYEAHHKVQIADSALVAAATLSDRYITSRFLPDKAIDLVDEAA
SRLRMEIDSSPLEIDELQRSVDRLRMEELALKNESDPASKQRLEKLRRDLADKEEELRGLNARWEKEKQGLNRVGELKER
LDELRGQAERAQRDGDFDAASKLLYGEIPGLERELEEAAEAEQEASKDTMVKEEVGPDDIADVVGAWTGIPAGRLLEGET
QKLLRMESELGKRLIGQSEAVQAVSDAVRRTRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMIRIDMSE
YGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDVLLQVLDDGRLTDGQGRTVDFRNTILVL
TSNLGSQFLMDPLVKPEVKKEQVLDVVRASFKPEFINRLDDLVVFSALSGDELAHIAGLQIDRLAARLADRRLTLDVTPE
ALAWLAQEGNDPAYGARPLRRLIQSAIGDRLAKEILSGEVRDGDTVRVERTEDGLIVGPAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 1e-99 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SGR_3426 YP_001824938.1 ATP-dependent protease subunit VFG2076 Protein 2e-113 45
SGR_3426 YP_001824938.1 ATP-dependent protease subunit VFG2084 Protein 2e-104 41