Gene Information

Name : Oter_2103 (Oter_2103)
Accession : YP_001818986.1
Strain : Opitutus terrae PB90-1
Genome accession: NC_010571
Putative virulence/resistance : Virulence
Product : two component, sigma54 specific, Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2695145 - 2696548 bp
Length : 1404 bp
Strand : +
Note : PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tde:TDE1969 sigma-54 dependent transcriptional regulato

DNA sequence : 
ATGGTGCCGAGCGTTTTGATCGTCGATGACGAAAAGCACACGCGCGAGGGTTTGCAGCAGGCGCTGGTCGACAGCTACGA
CGTGTCACTGGCTGCGAGCGCGGACGAGGCGTTCAACCTGATGGATGCGCAGCCGTTCGACGTGATCGTCACGGACCTGC
GCATGCCGGGCAAATCGGGGCTGAAGGTGATCGACAAGGCGCTGGCGCAGCCGAACCGGCCCGCCGTGCTGATGATGACC
GCTTACGGCAACATCGAGACGGCGGTCGAGGCGATGAAGCGCGGCGCGGTGGATTTCCTGACCAAGCCGGTGAACATCGA
GCGCCTGGAGGTGCTGATCCAGCGGGCGCTGAAGGCCAAGACGCTCGAGGTCGAGGTGAAGCAGCTGCACGAGCGGCTCG
ACGAGAAGTTCAGTTTCGAAGGCATCATCGGCAACTCGCCCAAGCTGCACGAAGTCATCGACCGGGTGAAACTGGTCGCG
CCGTCGCGCGCGACGATCCTGATCGAAGGCGAGTCCGGCACCGGCAAGGAGCTGATCGCCCAGGCGATTCACCAGTCGAG
CTCGCGGTCGCGCGGGCCGTTCCTCGCGGTGCACTGCGCGGCGCTGTCGGAGAACCTGCTCGAGAGCGAGCTGTTCGGCC
ACGAGCGAGGCTCGTTCACCGGCGCCACGGAACGACGGATCGGCCGGTTCGAGTCCGCCGACGGCGGCACGCTGTTTCTT
GACGAAATCGGCGAGATATCCGCGTCGACGCAGGTGAAGCTGCTGCGGTTCCTGGAGACGAAATCGATCGAGCGCGTCGG
CGGTTCCAAGCCGATCGATCTCGATGTGCGGCTGGTGGCGGCAACGAACCGCACTCTCGAACAACTTGTGCGCGACGGGA
AGTTCCGCGAGGACCTTTTCTTCCGGCTGAACGTGGTGCGAATCACCATGCCGCCGCTGCGCGAGCGCGCGGAGGACGTT
CCACTGCTGCTCGGGCACTACATCACGGCGTTCTCCGAGGAAAACGGCGTCCCGCCGCTGACGATCGAGCCGGGCGCGCT
GGCCACGCTGCAGGCGTATCCGTGGCCCGGCAACATCCGCGAGCTGCGGAACTTTTGTGAGAACGCCGTGGTGTTGCGGC
GCGGCCGCAGCCTCTCGGAATACGACCTCGAACCGAGATACCGGGACGCCACCCTGGCGGGCGCGACCGGCCCGGCACCG
ACGCCGGGCGCGCCGGGCTCGACCGTACTCGGCGGCGCGGTGCCGACGTCGTTCTCCGTCGAGGAAAACGAAAAGCGACT
GTTGCGAGAGGCGCTGATCAAGTCGCGCGGCAACCGCACCAAGGCCGCCGAGCTGATGGGCATCAGCCGGCGCACGCTGC
ATCGCAAGATCGCGCAGTGGCCCGAGCTCGACGTCGTGGACTAG

Protein sequence : 
MVPSVLIVDDEKHTREGLQQALVDSYDVSLAASADEAFNLMDAQPFDVIVTDLRMPGKSGLKVIDKALAQPNRPAVLMMT
AYGNIETAVEAMKRGAVDFLTKPVNIERLEVLIQRALKAKTLEVEVKQLHERLDEKFSFEGIIGNSPKLHEVIDRVKLVA
PSRATILIEGESGTGKELIAQAIHQSSSRSRGPFLAVHCAALSENLLESELFGHERGSFTGATERRIGRFESADGGTLFL
DEIGEISASTQVKLLRFLETKSIERVGGSKPIDLDVRLVAATNRTLEQLVRDGKFREDLFFRLNVVRITMPPLRERAEDV
PLLLGHYITAFSEENGVPPLTIEPGALATLQAYPWPGNIRELRNFCENAVVLRRGRSLSEYDLEPRYRDATLAGATGPAP
TPGAPGSTVLGGAVPTSFSVEENEKRLLREALIKSRGNRTKAAELMGISRRTLHRKIAQWPELDVVD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-60 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-60 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Oter_2103 YP_001818986.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0467 Protein 3e-77 44
Oter_2103 YP_001818986.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0089 Protein 6e-75 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Oter_2103 YP_001818986.1 two component, sigma54 specific, Fis family transcriptional regulator VFG0116 Protein 3e-63 43