Gene Information

Name : Oter_1407 (Oter_1407)
Accession : YP_001818292.1
Strain : Opitutus terrae PB90-1
Genome accession: NC_010571
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1769289 - 1770086 bp
Length : 798 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rca:Rcas_2599 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGGATTTGATCGCAGCGGACGAGTCGGCGGACGAGCCCAGCGGCTCGTCCGCGGGCGGGGAGCTTGGCGGGTCGGCGGA
GAGTTACGCTCGCTTTTCCGACGCAGCCGGGCTGTATCTGCCGTTGAATGCGATGAAGATACTCGTGGTCGAGGACGAGC
GCCGCGTCGGGCAGTTCGTCGAGAAGGCGCTGACGGAGCAAAACTACACCGCGCGGTTGGTGCGCACCTGCGCCGAGGCC
CGCGATGTGCTGGCGGAATCGACCTTCGACGCCGTGGTGCTGGATCTGGGGCTGCCGGACGGCGACGGACTCGATCTGCT
GCGGGAGTGGCGGGCCAGCGGGTTCAACGAACCGGTGCTCGTGCTGAGCGCGCGCGACGCCGTCGGCGATCGCGTGCGCG
GGTTGAACATGGGTGCGGACGATTATCTGCCGAAGCCGTTCAGCGTCGACGAAGTGGTGGCGCGGGTCCGGTCTTTGCTG
CGGCGGCATGCGGGCGTGAAGACGACCGTGCTCACCCACGGACCGGTGCGCATGGACTTGCTCGGTCGCAGCGTCACCTG
CGCCGGCCGGCCGGTCGAGCTGACCAGCCGCGAATACGCGCTGCTGGAGCTGTTCCTGCAGAATCCGCGCCGGGTGCTGA
CGCGGACGCTGATCGCGGAAAAGGTATGGGAGGCGAGTTACGATCTCGAGACCAACCTGATCGACGTCTACGTACGCCGG
CTGCGCCAGAAGCTCGAGGCGCCCGGCCAGCCGCCGCTGATCAAGACGATTCGCGGCACCGGTTATCAGCTTTCGTGA

Protein sequence : 
MDLIAADESADEPSGSSAGGELGGSAESYARFSDAAGLYLPLNAMKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEA
RDVLAESTFDAVVLDLGLPDGDGLDLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLL
RRHAGVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVWEASYDLETNLIDVYVRR
LRQKLEAPGQPPLIKTIRGTGYQLS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-29 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 9e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Oter_1407 YP_001818292.1 two component transcriptional regulator BAC0308 Protein 8e-40 45
Oter_1407 YP_001818292.1 two component transcriptional regulator BAC0638 Protein 7e-31 45
Oter_1407 YP_001818292.1 two component transcriptional regulator BAC0083 Protein 2e-38 44
Oter_1407 YP_001818292.1 two component transcriptional regulator BAC0111 Protein 6e-39 43
Oter_1407 YP_001818292.1 two component transcriptional regulator BAC0197 Protein 6e-33 41
Oter_1407 YP_001818292.1 two component transcriptional regulator BAC0347 Protein 4e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Oter_1407 YP_001818292.1 two component transcriptional regulator VFG1390 Protein 1e-36 45
Oter_1407 YP_001818292.1 two component transcriptional regulator VFG0596 Protein 1e-29 43