Gene Information

Name : BamMC406_5666 (BamMC406_5666)
Accession : YP_001815662.1
Strain :
Genome accession: NC_010557
Putative virulence/resistance : Virulence
Product : lytic transglycosylase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 173810 - 174277 bp
Length : 468 bp
Strand : +
Note : PFAM: Lytic transglycosylase catalytic; KEGG: bam:Bamb_5883 lytic transglycosylase, catalytic

DNA sequence : 
ATGATGCGACTATTCACGCCCAAGCCGGCGCTCGCGCTGGCGCTTGCCGTTCTGTCCGCGCGGCCCGCCGAAGTGCGCGC
GCAGACCCCCGACTGCTTTGCGGCGGCCGCAGCCTATCAACATGTGAGCCCCGTCGTGCTGCGCGCGATCGCGTGGCAAG
AATCGCATGGCAACGCGAACGCGCTCCATCGCAATCGGAACGGTTCGACCGATTACGGCATGATGCAGATCAACTCTATT
CACCTTCCGCTGCTGTCGCGCTACGGCGTCTCGGCTGACGACCTCATGAACCCTTGCTTGAGCGTGTACGTGGCTGCGTG
GCACCTGCACAAGATGATGGTCAAGTACGGGAACAACTGGGCGGCGATCGGTGCCTACCATTCGGAGACACCTGCCGAGC
GCGACCGCTACGCGCGTTCGGTGCAAAGCATCGTCGAGCGCATGAAGCTGGCGGACGACGGGCAGTAG

Protein sequence : 
MMRLFTPKPALALALAVLSARPAEVRAQTPDCFAAAAAYQHVSPVVLRAIAWQESHGNANALHRNRNGSTDYGMMQINSI
HLPLLSRYGVSADDLMNPCLSVYVAAWHLHKMMVKYGNNWAAIGAYHSETPAERDRYARSVQSIVERMKLADDGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hpaH YP_362172.1 transglycosylase HpaH Virulence Hrp PAI Protein 8e-38 67
hpaH AAL78295.1 HpaH precursor Virulence Hrp PAI Protein 6e-38 67
hpa2 AAF61278.1 Hpa2 precursor Virulence Hrp PAI Protein 9e-37 67
hpa2 NP_640772.1 Hpa2 protein Virulence Hrp PAI Protein 3e-37 66
XC_3001 YP_244069.1 Hpa2 protein Virulence Hrp PAI Protein 2e-37 66
hpa2 NP_636615.1 Hpa2 protein Virulence Hrp PAI Protein 2e-37 66
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 2e-13 42
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 2e-13 42
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 2e-13 42
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 2e-13 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BamMC406_5666 YP_001815662.1 lytic transglycosylase VFG1789 Protein 5e-15 42
BamMC406_5666 YP_001815662.1 lytic transglycosylase VFG0539 Protein 6e-14 42