Gene Information

Name : BamMC406_5645 (BamMC406_5645)
Accession : YP_001815641.1
Strain :
Genome accession: NC_010557
Putative virulence/resistance : Virulence
Product : HrpO family type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 150154 - 150417 bp
Length : 264 bp
Strand : +
Note : TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3; KEGG: bam:Bamb_5862 type III secretion protein, HrpO family

DNA sequence : 
ATGGAAACCGATACGCTCGTTCGCATCACCTCGCAGGGCCTGCTGCTCTGCCTGTCCGTCTCGATGCCGGTGGTGGCCGT
CGCCGCGCTCTCCGGCCTCGCGATTTCGTTCGTGCAGGCCATCACGTCGATGCAGGACCAAAGCATCTCGTACGCGGTGA
AGCTCGTGGCCGTCGTGGCCACCGTGCTCATGACCGGCGCCTGGGGCGCCGCCGCGATCCTGCGCTTCGCCAATCAGATC
GTCACGCTCGCGGTGCCGTCATGA

Protein sequence : 
METDTLVRITSQGLLLCLSVSMPVVAVAALSGLAISFVQAITSMQDQSISYAVKLVAVVATVLMTGAWGAAAILRFANQI
VTLAVPS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS AAD21322.1 HrcS Virulence Hrp PAI Protein 6e-15 59
hrcS BAB07863.1 HrcS Virulence Hrp PAI Protein 6e-15 59
hrcS YP_362152.1 HrcS protein Virulence Hrp PAI Protein 9e-15 59
hrcS YP_198719.1 hypothetical protein Virulence Hrp PAI Protein 9e-15 59
hrcS AAP34350.1 HrcS Virulence Hrp PAI Protein 8e-15 57
hrcS NP_640756.1 HrcS protein Virulence Hrp PAI Protein 1e-14 57
XC_3017 YP_244085.1 HrcS protein Virulence Hrp PAI Protein 7e-12 55
hrcS NP_636599.1 HrcS protein Virulence Hrp PAI Protein 7e-12 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BamMC406_5645 YP_001815641.1 HrpO family type III secretion protein VFG0043 Protein 3e-06 43
BamMC406_5645 YP_001815641.1 HrpO family type III secretion protein VFG0395 Protein 2e-05 42
BamMC406_5645 YP_001815641.1 HrpO family type III secretion protein VFG0187 Protein 4e-05 41