Gene Information

Name : BamMC406_6588 (BamMC406_6588)
Accession : YP_001812258.1
Strain :
Genome accession: NC_010553
Putative virulence/resistance : Unknown
Product : integrase catalytic region
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 80050 - 80940 bp
Length : 891 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: bxe:Bxe_A3769 putative transposase

DNA sequence : 
GTGAAGTACGCCTTCATCGAACGCAATCGGTGTCACTGGCCGATTTCGGTGTTATGCGAAGTACTCGATGTGAGCCCCAG
CGGCTTTCATCAGCGGCGGCAACGTGTTGCGCAGAACAAGCCACACCGAGGCCACGTGAGCAACGACGCACTGCTGGCGC
ACATCAAGGCGGTTCACGCGGAGGTCAAGGGCGAATACGGCTGGCCGCGCATGTGGAAAGAGCTGGTTTCGCGCGGCGTA
CGCGTGGGCAAGGAGCGAGTTCGCAAGCTGATGGCGCAGCATGGTATCCGCGCACGGCACAAGCGCAAGTACATCGCAAC
GACGAACTCGAACCACAACCTGCCGGTCGCGCCGAACCTGTTGGAGCAAAACTTCACGACGACAGCGCCGAATCACGTCT
GGACTAGCGACATCACGTATGTGGCGACGGCCGAAGGCTGGCTGTATCTGGCCGTCATAATCGACCTGTTCAGCCGGCAG
GTGGTGGGCTGGTCGATGCAGCCGCATATGAAGGCCGAACTGGTCACGGACGCGCTGCGCATGGCATGGTTCCGGCGCCG
CCCCGAAGCCGGCGTGATTGTGCATAGCGACCGTGGCAGCCAGTATTGCAGCGGACTCTTCCAGGACACGCTCAAGGCGT
ACGCCATGCGTTCGTCGATGAGCCGGCGCGGCGATTGTTGGGATAATGCGCCGACCGAAAGCCTGTGGGGTTCGCTGAAG
GTCGCACGACTGCACGGTCGGCACTTCGCGACGCGGCGTGCCGCGATGGATGAAATCGTCGACTGGCTTGGTTTCTACAA
TGCCCGTCGACTGCATTCGACACTGAACTACGTCAGCCCCATGAAGTTCGAGAAGAATTGGGCCGCCGCTCAGCGAGGGC
AAGCGGCCTGA

Protein sequence : 
MKYAFIERNRCHWPISVLCEVLDVSPSGFHQRRQRVAQNKPHRGHVSNDALLAHIKAVHAEVKGEYGWPRMWKELVSRGV
RVGKERVRKLMAQHGIRARHKRKYIATTNSNHNLPVAPNLLEQNFTTTAPNHVWTSDITYVATAEGWLYLAVIIDLFSRQ
VVGWSMQPHMKAELVTDALRMAWFRRRPEAGVIVHSDRGSQYCSGLFQDTLKAYAMRSSMSRRGDCWDNAPTESLWGSLK
VARLHGRHFATRRAAMDEIVDWLGFYNARRLHSTLNYVSPMKFEKNWAAAQRGQAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 3e-48 45
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 5e-47 45
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 3e-48 45
unnamed AAF09030.1 unknown Not tested SHI-O Protein 3e-48 45
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 2e-48 45
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 3e-48 45
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 2e-48 45
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 1e-48 45
unnamed AAF09022.1 unknown Not tested SHI-O Protein 1e-48 45
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 5e-45 44
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 2e-46 44
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 1e-44 44
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-44 44
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-44 44
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 8e-47 44
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 8e-47 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BamMC406_6588 YP_001812258.1 integrase catalytic region VFG1706 Protein 8e-49 45
BamMC406_6588 YP_001812258.1 integrase catalytic region VFG1631 Protein 3e-45 44