Gene Information

Name : BamMC406_6566 (BamMC406_6566)
Accession : YP_001812240.1
Strain :
Genome accession: NC_010553
Putative virulence/resistance : Virulence
Product : lytic transglycosylase catalytic
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 56442 - 56864 bp
Length : 423 bp
Strand : -
Note : PFAM: Lytic transglycosylase catalytic; KEGG: bmu:Bmul_5550 lytic transglycosylase catalytic

DNA sequence :
GTGATCGGCCTTCGTTCGATTCTCGCGTGCATGCTGTTTTGCGCGGCCGCGGTGTGTCGCGCCGACTGCATCGATGACGC
GGCCATGTACCACCGGCTGAATCCGCGGCTGCTGCGCGCGATCGCTCAGCACGAGTCTGGCATGCGCCCCGACGCGATCA
ACCGCAATTCCAATGGCAGCGAGGACATCGGCCTGATGCAGATCAATTCGTCCTGGCTGCCCAAGCTCTCGCAGTACGGG
ATTCGTCGCGAACACCTGTTCAACGCCTGCGTGAGCGCGTACGTCGGCGCATGGATACTCGCCGCGAACATCAAGCAATT
CGGGCCGAACTGGAAGGCGGTCGGTGCGTACAACGCGGTCACGCCTTCGAAGCAGCTCGTCTATGCGAGCGCGATTTACC
GCCGCCTCATGCAGGTCCAATAA

Protein sequence :
MIGLRSILACMLFCAAAVCRADCIDDAAMYHRLNPRLLRAIAQHESGMRPDAINRNSNGSEDIGLMQINSSWLPKLSQYG
IRREHLFNACVSAYVGAWILAANIKQFGPNWKAVGAYNAVTPSKQLVYASAIYRRLMQVQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3001 YP_244069.1 Hpa2 protein Virulence Hrp PAI Protein 2e-22 52
hpa2 NP_636615.1 Hpa2 protein Virulence Hrp PAI Protein 2e-22 52
hpaH YP_362172.1 transglycosylase HpaH Virulence Hrp PAI Protein 1e-22 51
hpaH AAL78295.1 HpaH precursor Virulence Hrp PAI Protein 9e-23 51
hpa2 NP_640772.1 Hpa2 protein Virulence Hrp PAI Protein 6e-23 50
hpa2 AAF61278.1 Hpa2 precursor Virulence Hrp PAI Protein 2e-22 50
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 2e-14 45
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 2e-14 45
ECO111_3763 YP_003236099.1 hypothetical protein Not tested LEE Protein 9e-11 44
unnamed AAC38373.1 rOrf3 Not tested LEE Protein 2e-10 44
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 6e-15 42
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 6e-15 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BamMC406_6566 YP_001812240.1 lytic transglycosylase catalytic VFG0539 Protein 6e-15 45
BamMC406_6566 YP_001812240.1 lytic transglycosylase catalytic VFG0719 Protein 7e-11 44