Gene Information

Name : BamMC406_4873 (BamMC406_4873)
Accession : YP_001811537.1
Strain :
Genome accession: NC_010552
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2010437 - 2011099 bp
Length : 663 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_4356 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGCGCGTACTGCTCGTCGAGGACGATCCGCTGATCGGCAGCGGTCTCGAACAGGGTCTCAAACAGGAAGGCTTCGCGGT
CGACTGGGTCAAGGACGGCGACGCCGCGTCGCTCGCGCTGCGCTCGACCGCGTATGGCCTCCTGCTGCTCGACCTCGGGC
TGCCGAACCGTGACGGCCTGTCGGTGCTCGCGTCGCTGCGCCGCCGCGACGAAACCCTGCCCGCAATCATCATCACCGCG
CGCGATGGCGTGCCGGACCGCATCGCCGGCCTCGACAGCGGCGCCGACGACTACCTCGTCAAGCCGTTCGTGCTCGAGGA
GCTGCTCGCCCGCATCCGCGCAGTCAACCGCCGCCATGCGGGGCGCGCGCAAACGACCCTCGCGATCGGTCCGCTGCGGC
TCGATCCGGTCAAGCATCTGGTCTGGCTCAACGACGACGAAGTCACGCTGTCGCCGAAGGAATTCGTGCTGCTGCACGAG
CTGATGCGCGACCCCGGCGCGGTGATCTCGCGCGAACAGTTCGAGGAACGGCTGTACAGCTGGGGCGAGGAAATCGAGAG
CAACGCGGTGCAGGTGCACATCCACAACCTGCGCAAGAAACTCGGCCACGACATGATCCGCACGGTGCGCGGCGTCGGCT
ACCGGATCGGTGACGGCGCATGA

Protein sequence : 
MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRSTAYGLLLLDLGLPNRDGLSVLASLRRRDETLPAIIITA
RDGVPDRIAGLDSGADDYLVKPFVLEELLARIRAVNRRHAGRAQTTLAIGPLRLDPVKHLVWLNDDEVTLSPKEFVLLHE
LMRDPGAVISREQFEERLYSWGEEIESNAVQVHIHNLRKKLGHDMIRTVRGVGYRIGDGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-38 50
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-25 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BamMC406_4873 YP_001811537.1 two component transcriptional regulator BAC0487 Protein 2e-33 45
BamMC406_4873 YP_001811537.1 two component transcriptional regulator BAC0083 Protein 2e-29 42
BamMC406_4873 YP_001811537.1 two component transcriptional regulator BAC0197 Protein 8e-29 42
BamMC406_4873 YP_001811537.1 two component transcriptional regulator AE015929.1.gene1106. Protein 2e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BamMC406_4873 YP_001811537.1 two component transcriptional regulator VFG0473 Protein 4e-42 50
BamMC406_4873 YP_001811537.1 two component transcriptional regulator VFG0596 Protein 1e-25 42