Gene Information

Name : BamMC406_4752 (BamMC406_4752)
Accession : YP_001811422.1
Strain :
Genome accession: NC_010552
Putative virulence/resistance : Virulence
Product : HrpO family type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 1887781 - 1888059 bp
Length : 279 bp
Strand : -
Note : TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3; KEGG: bmu:Bmul_3740 type III secretion protein, HrpO family

DNA sequence : 
ATGACGAGCTCGACGATCCTCGACCTGACGCGGCAGGCGCTGATGCTGGTGCTGCTGCTGTCGCTGCCGATCGTGCTGAT
CGCGACCGTCACCGGTCTCGTCGTCGCGATCCTGCAGGCGGTCACGCAGGTGCAGGACGCCAACATCGGCATCGCGGTGC
GGCTGATCGCCGTGATGGTCGCGCTGGTGCTGCTGTCGGGCTGGCTCGGCAGCGAGGTGCTGCGCTTCGCGCAGCAGGCG
CTTGAACGCATGTTCGTTTCTTCCACAGGAGTGCTTTGA

Protein sequence : 
MTSSTILDLTRQALMLVLLLSLPIVLIATVTGLVVAILQAVTQVQDANIGIAVRLIAVMVALVLLSGWLGSEVLRFAQQA
LERMFVSSTGVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 3e-06 49
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 2e-04 44
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 2e-04 44
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 2e-04 44
lscS AAO18039.1 LscS Virulence TTSS locus Protein 1e-06 43
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 2e-04 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BamMC406_4752 YP_001811422.1 HrpO family type III secretion protein VFG0187 Protein 1e-04 50
BamMC406_4752 YP_001811422.1 HrpO family type III secretion protein VFG0395 Protein 5e-07 43