Gene Information

Name : BamMC406_4737 (BamMC406_4737)
Accession : YP_001811407.1
Strain :
Genome accession: NC_010552
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : 3.1.1.3
Position : 1859717 - 1860391 bp
Length : 675 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGGGCAACCTGCCGAATCCGGTCGCGCTGATCGCGGTGATCGCCGCGCTGGGCATCGCGCCGTTCGCGGCGCTGATGGT
GACGAGCTATACGAAGCTCGTGGTCGTGCTCGGCCTGTTGCGCTCCGCGCTCGGCATCCAGCAGGTGCCGCCGAACCTCG
TGCTGAACGGCATCGCGCTGATCCTGTCGCTGTTCATCATGGCGCCGGTCGGGATGTCGATCCGCGATGCGCTGCAGTCG
CGCCACTTCGATGCATCGGGGCAACTGTCGACTTCCGATATCGGCGTACTCGCCGATGCCGCGCTGCCGCCGATCAAGGA
TTTCCTGGTGTCGCATACGCGGCAGCGCGACCGCGAATTCTTCGTGCGCACCGCGACGTCGGTCTGGCCGAAGAATCGCG
CGGACGGCATCAAGGACGACGACCTGCTCGTGCTGGTGCCGAGCTTCACGCTCGCCGAGTTGACCAAGGCGTTCCAGATC
GGCTTCGTGATCTATATCGTGTTCATCGTCGTCGACCTGCTGGTCGCGAACATCCTGCTCGCGCTCGGGATGCAGATGAT
CTCGCCGACGACGATCTCGGTGCCGTTCAAGCTGCTGCTGTTCGTCGCGCTCGACGGCTGGTCGCTGCTGGTGCACGGGC
TCGTGCTGTCGTACCGCGTGGCGGGGGCGGGATGA

Protein sequence : 
MGNLPNPVALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQS
RHFDASGQLSTSDIGVLADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDDDLLVLVPSFTLAELTKAFQI
GFVIYIVFIVVDLLVANILLALGMQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSYRVAGAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-51 60
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 9e-52 60
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-51 60
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-51 60
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-51 60
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 9e-52 60
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-50 59
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-50 59
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-41 50
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 6e-35 48
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-27 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-27 45
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-27 45
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-33 45
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-33 45
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-33 45
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-33 45
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-33 45
escR AAL57527.1 EscR Virulence LEE Protein 1e-29 44
escR CAC81847.1 EscR protein Virulence LEE II Protein 1e-29 44
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-29 44
escR CAI43889.1 EscR protein Virulence LEE Protein 1e-29 44
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-29 44
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-29 44
escR AAC31528.1 L0049 Virulence LEE Protein 1e-29 44
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-29 44
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 1e-29 44
escR AAK26700.1 EscR Virulence LEE Protein 1e-29 44
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-29 44
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 7e-26 43
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 3e-22 43
escR AAC38369.1 EscR Virulence LEE Protein 2e-28 43
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 9e-30 43
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 9e-30 43
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 3e-23 42
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-21 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-21 42
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-23 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 3e-22 42
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 4e-30 42
unnamed AAL06354.1 EscR Virulence LEE Protein 4e-28 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BamMC406_4737 YP_001811407.1 type III secretion system protein VFG0394 Protein 3e-41 51
BamMC406_4737 YP_001811407.1 type III secretion system protein VFG0188 Protein 8e-44 50
BamMC406_4737 YP_001811407.1 type III secretion system protein VFG0044 Protein 2e-37 46
BamMC406_4737 YP_001811407.1 type III secretion system protein VFG0519 Protein 5e-34 45
BamMC406_4737 YP_001811407.1 type III secretion system protein VFG0827 Protein 7e-30 44
BamMC406_4737 YP_001811407.1 type III secretion system protein VFG1012 Protein 3e-28 43
BamMC406_4737 YP_001811407.1 type III secretion system protein VFG2455 Protein 1e-27 43
BamMC406_4737 YP_001811407.1 type III secretion system protein VFG0715 Protein 9e-29 43
BamMC406_4737 YP_001811407.1 type III secretion system protein VFG2338 Protein 2e-25 41
BamMC406_4737 YP_001811407.1 type III secretion system protein VFG1259 Protein 5e-25 41
BamMC406_4737 YP_001811407.1 type III secretion system protein VFG2494 Protein 2e-26 41