Gene Information

Name : BamMC406_3012 (BamMC406_3012)
Accession : YP_001809704.1
Strain :
Genome accession: NC_010551
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3519
EC number : -
Position : 3334586 - 3336466 bp
Length : 1881 bp
Strand : +
Note : TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: bte:BTH_II0136 bacterial protein of unknown function (DUF879) superfamily

DNA sequence :
ATGGATCCCAGATTTCTCGACCACTACAATCGCGAACTGACCTACATGCGCGAGCTGTCGGCGGAGTTCGCCGCACAGCA
TCCGAAGATCGCCCGCCGGCTCGGCATGCACGGCATCGAAACGGCCGATCCTTACGTGGAGCGGATGATCGAAGCGTTCT
GCTTCATGTCGGCGCGTACGCAGCTCAAGCTCGACGCCGAATTCCCGCGCTTTACGCAACGCCTGCTCGAGGTCGTGTAT
CCGAACTACGTTGCGCCGACGCCGTCGATGGCCGTGGCGAAGCTACGCCCGAGCCTGCGCGAAGGCAACTTCAGCAAGGG
CTTCACGGTGCCGCGCCACAGCGTATTGCGCTCGTCGATCCCACCAGGCGAACGGACCGCCTGCGAGTTTCGCAGCGGTC
ATGAAATCACGCTTTGGCCGATCGAGATCGTCGACGCGAAGCTGACCGCCGTGCCGCCGGACCTTCCCGACCTGCAGCGC
ATGCTGATGCCACACATGCGGCTGCGCGGCGCGCTTCGGTTGCGGCTGCGCACGGTCGGCGAAATCAAGTTCTCGCAGAT
CAGCGGGCTCGACCGGCTGTCGCTCTATATCGGCGGCGACGAGCGGATCGCGTCGCATCTGTTCGAACTGGTCCATGCCG
GCGGCATCGCGTCGGTCGTGCGCGCACACGGCGCTACCCGCGACGATTGCACGTTCGTCCCGAAGAATCCGGTCGATTTC
GAGGGCCTGCGCCCCGACCAGAGCCTGTTGCCGCAAATGTGGAATACGTTCCACGGGCACAATCTGCTGCACGAGTACTT
CACTTGTCGGCAGCGCTTCTATTTCTTCGTGCTTACGCAGTTGCAGGCCGGCCTTTCGAAGATCGACGGCAACGAAGCGG
AAATCGTGCTACTGCTCGACCGACTGCCGGACGAGCTGACGGCCCACGTCGATGCGTCGAGCTTTCAGTTGTTCTGCACG
CCGATCATCAACCTGTTTCCGCGACGCACCGACCGGATCGAGATCAATCGGGCGCTGACCGCGTTCCACCTGATTCCGGA
CCGCAGCCGCCCACTCGACTATGAAGTCTTCTCGGTATCGCGGGTATTCGGCCAGAAAGCCGAAACGTCGACCGAAGTGA
CGTTCAATCCGCTGTACCAGACGCTACACAGTGATATCGGCAATTACGGGCGTTACTTTTCGATTCTGCGCGAGCCGCGC
GCGATGTCGGCCAACGCGCGCAAATACGGCACCCGCAGCGAGTACGTCGGCACCGAAGTATTCGTGTCGCTCGTCGATCA
GGCCGAAGCGCCCTACGACGACGCGATCCGCTATCTGTCCGTCGACGCGTGGCTCACCAACCGCGACCTGCCGCGCCTGA
TTCCGCGCAACGGGTTCAGCGACCTCACGATGCAGGACTCCGTGCCGATCGAAGGCGTGAGTCTCGTGCATCCGCCAAGC
ACGCCGCGCGAGCCGTACGCGACCGGCGAAACCGCATGGCGGCTGATTCGCCAGTTGAGCTTCAACTACATGCCGCTCGC
GGAGCTCGATCATCGCGACGGCGGCCAGGCCCTGCGCAACATGCTGCGACTGTTCGTCGGAACGAGCGAACACGAACAGC
GCACGCAGATCGAGAGCCTCGTCGGCGCGCGCACCGAACCGGTCGTTCGACGCCTGCCCGGCCACGGGTTGCTCGTCTAC
GGGCGCGGCGTACGCTGCGAACTGACCGTCGACGAGAGCGGCTTCTCCGGTGTGAGCCCCTATTTGTTCGGCCTTGTGCT
CGAGCAGTACCTGGCGCGACACGTATCGATCAACGTCTTTACCGAGACGGAACTGCGCTCGATGCAACGCGGCGTCGTGA
CACGCTGGAAGCCGCGCATGGGCGGACGGGGAGCGGTGTAA

Protein sequence :
MDPRFLDHYNRELTYMRELSAEFAAQHPKIARRLGMHGIETADPYVERMIEAFCFMSARTQLKLDAEFPRFTQRLLEVVY
PNYVAPTPSMAVAKLRPSLREGNFSKGFTVPRHSVLRSSIPPGERTACEFRSGHEITLWPIEIVDAKLTAVPPDLPDLQR
MLMPHMRLRGALRLRLRTVGEIKFSQISGLDRLSLYIGGDERIASHLFELVHAGGIASVVRAHGATRDDCTFVPKNPVDF
EGLRPDQSLLPQMWNTFHGHNLLHEYFTCRQRFYFFVLTQLQAGLSKIDGNEAEIVLLLDRLPDELTAHVDASSFQLFCT
PIINLFPRRTDRIEINRALTAFHLIPDRSRPLDYEVFSVSRVFGQKAETSTEVTFNPLYQTLHSDIGNYGRYFSILREPR
AMSANARKYGTRSEYVGTEVFVSLVDQAEAPYDDAIRYLSVDAWLTNRDLPRLIPRNGFSDLTMQDSVPIEGVSLVHPPS
TPREPYATGETAWRLIRQLSFNYMPLAELDHRDGGQALRNMLRLFVGTSEHEQRTQIESLVGARTEPVVRRLPGHGLLVY
GRGVRCELTVDESGFSGVSPYLFGLVLEQYLARHVSINVFTETELRSMQRGVVTRWKPRMGGRGAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0289 NP_454871.1 hypothetical protein Not tested SPI-6 Protein 0.0 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BamMC406_3012 YP_001809704.1 type VI secretion protein VFG2074 Protein 1e-120 44