Gene Information

Name : BamMC406_1972 (BamMC406_1972)
Accession : YP_001808669.1
Strain :
Genome accession: NC_010551
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2200065 - 2200739 bp
Length : 675 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bam:Bamb_2102 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGCGAGTACTGACGGTCGAAGACGATGCGGTGACCGCGAACGAGATCGTTGGCGAACTGACCGCGCGCGGGTTCGAGGT
CGATTGGATCGACAACGGCCGCGAAGGAATGATGCGCGCGATGAGCGCATCCTACGATGCGATCACGCTCGACCGGATGC
TGCCCGGTGCTGACGGGCTCGCGATCCTGACCGCGATGCGCACGGTCGGCATCGATACGCCGGTGCTGATGCTGAGCGCG
CTCGGCGACGTCGACGAGCGCATCCGCGGGCTGCGCGCGGGCGGCGACGACTACCTGACCAAGCCGTTCGATTCCGGCGA
ACTGAGCGCGCGCATCGAAGTGCTGTTGCGCCGCCGGCAGGCATCGGGCGTGCCGCAGCAGACGTTGTTGACGGTCGGCC
CGCTCGAACTCGACCTCATTTCGCGCTGCGCGCGCCGCGGTGTCGACGAGATTCCATTGCTGCCCACCGAGTTTCGCGTC
CTCGAATTCATGATGCGCAACGCGGGGCAGACGATCACGCGCACGATGCTGTTCGAGGCCGTGTGGGGCTATCACTTCGA
CCCGGGCACCAACCTGATCGATGTCCACATGGGGCGGCTGCGCAAGAAGATCGACCCGCCGGGCGCCGTGCCGATAATCC
AGACCGTGCGCGGCTCGGGCTACATGCTCCGATGA

Protein sequence : 
MRVLTVEDDAVTANEIVGELTARGFEVDWIDNGREGMMRAMSASYDAITLDRMLPGADGLAILTAMRTVGIDTPVLMLSA
LGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQASGVPQQTLLTVGPLELDLISRCARRGVDEIPLLPTEFRV
LEFMMRNAGQTITRTMLFEAVWGYHFDPGTNLIDVHMGRLRKKIDPPGAVPIIQTVRGSGYMLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BamMC406_1972 YP_001808669.1 two component transcriptional regulator BAC0125 Protein 9e-38 44
BamMC406_1972 YP_001808669.1 two component transcriptional regulator BAC0347 Protein 4e-39 44
BamMC406_1972 YP_001808669.1 two component transcriptional regulator BAC0111 Protein 2e-40 44
BamMC406_1972 YP_001808669.1 two component transcriptional regulator BAC0197 Protein 3e-38 44
BamMC406_1972 YP_001808669.1 two component transcriptional regulator BAC0083 Protein 5e-40 42
BamMC406_1972 YP_001808669.1 two component transcriptional regulator BAC0638 Protein 7e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BamMC406_1972 YP_001808669.1 two component transcriptional regulator VFG1389 Protein 3e-36 43
BamMC406_1972 YP_001808669.1 two component transcriptional regulator VFG0596 Protein 6e-33 41