Gene Information

Name : BamMC406_1233 (BamMC406_1233)
Accession : YP_001807940.1
Strain :
Genome accession: NC_010551
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1360512 - 1361192 bp
Length : 681 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bvi:Bcep1808_5665 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGAAAATCCTCTTGGTCGAAGACAATCAGCAGGTGGCGGGCTTTCTGAAGAAAGGCCTGCTTGAAACCGGCCACGTCGT
CGATTGGGCCGACAACGGCCGCGACGGCATGGCGCTCGCGATCGGGGAATCCTACGACGCGATCGTGCTCGACCGCATGC
TGCCCGGCGGTATCGACGGACTCAAGATCGTCGCTGCGCTGCGCGCGGCGGGCAGCAAGGTTCCCGTGCTGATCCTCAGC
GCACTCGACGAAGTCGACGAACGGATTCGCGGGCTGAAGGCGGGCGGCGACGATTACGTCGTCAAGCCATTTTCGTTCGG
CGAGGTCGTTGCGCGGCTCGAAGCGCTCGCGCGGCGTTCGCAGGACAACGGCTTCGACACGAAGCTCAAGGTCGGCGATC
TCTGCATCGACCTGCTGTCGCGGAAAGTGGCGCGCGCGGGCAATGCGATCCTGCTCAAGCCGCGCGAGTTTAAGCTGCTC
GAATATCTGATGCGCCACGCGGAGCAGGTCGTCACCCGCACGATGCTGCTCGAAAACATCTGGGAATACCATTTCGATCC
GCAAACGAACGTCATCGACGTGCACGTGAGCAAGCTGCGCCAGAAGATCGACACGGGCTTTGACCGCTCGCTGCTGCGGA
CCATCCGCAACGCGGGCTACATGCTCACTGCCGCCGACTGA

Protein sequence : 
MKILLVEDNQQVAGFLKKGLLETGHVVDWADNGRDGMALAIGESYDAIVLDRMLPGGIDGLKIVAALRAAGSKVPVLILS
ALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRSQDNGFDTKLKVGDLCIDLLSRKVARAGNAILLKPREFKLL
EYLMRHAEQVVTRTMLLENIWEYHFDPQTNVIDVHVSKLRQKIDTGFDRSLLRTIRNAGYMLTAAD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-42 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-41 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BamMC406_1233 YP_001807940.1 two component transcriptional regulator BAC0347 Protein 2e-49 47
BamMC406_1233 YP_001807940.1 two component transcriptional regulator BAC0111 Protein 1e-52 47
BamMC406_1233 YP_001807940.1 two component transcriptional regulator BAC0125 Protein 3e-45 45
BamMC406_1233 YP_001807940.1 two component transcriptional regulator BAC0083 Protein 5e-48 45
BamMC406_1233 YP_001807940.1 two component transcriptional regulator BAC0197 Protein 7e-47 44
BamMC406_1233 YP_001807940.1 two component transcriptional regulator BAC0308 Protein 1e-43 43
BamMC406_1233 YP_001807940.1 two component transcriptional regulator BAC0638 Protein 1e-42 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BamMC406_1233 YP_001807940.1 two component transcriptional regulator VFG0596 Protein 3e-42 45
BamMC406_1233 YP_001807940.1 two component transcriptional regulator VFG1389 Protein 7e-33 43